Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D05
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...   150   1e-36
AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical...    36   0.050
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical...    29   3.3  

>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score =  150 bits (364), Expect = 1e-36
 Identities = 66/138 (47%), Positives = 97/138 (70%), Gaps = 1/138 (0%)
 Frame = +2

Query: 302 IQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQD 481
           + LQAMD+SHV+LVSL L    FD YRCDR I++G++L +MSK LKCA + DT  +K ++
Sbjct: 1   MSLQAMDSSHVALVSLKLEVGLFDTYRCDRTINLGLSLANMSKALKCANNDDTCMLKYEE 60

Query: 482 N-ADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEFARICRDLSQ 658
           N  D++ F F  P ++K  D  +K+M++D EHLGIP+ +Y+    MP+ EF + C+DLS 
Sbjct: 61  NEGDSIIFTFADPKRDKTQDVTVKMMDIDSEHLGIPDQDYAVVCEMPAGEFQKTCKDLST 120

Query: 659 FGESMVISCTKEGVKFSG 712
           F +S+ I+ TK G+ F+G
Sbjct: 121 FSDSLNITATKAGIVFTG 138



 Score = 35.9 bits (79), Expect = 0.038
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +3

Query: 717 GDIGSANVKLAQTASIDKXXXXXXXXXXXXXTLTFACQYLNFFTKATSLSPQVQ 878
           GDIGS+ V  + +++ D               + F+ +Y+N FTKAT+LS +V+
Sbjct: 140 GDIGSSVVTYSPSSNTDDETEAVTLEVKDPVNVNFSIKYMNQFTKATALSDRVR 193


>AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical
           protein Y73F8A.27 protein.
          Length = 169

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
 Frame = +2

Query: 335 SLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFES 514
           S++ L +RA GF ++  +       N   M+  ++  GD +    K++D   N+T+V   
Sbjct: 3   SVLRLAMRAKGFSRFLAETQAFPVKNRHFMTSSVRKTGDFEYEDPKSEDEVVNITYVLRD 62

Query: 515 PNQE----KVSDYEMKLMN-LDLEHLGIPETEYSCT 607
             +     KV D  M L +  D+E  G  E   +C+
Sbjct: 63  GTERKIRGKVGDNVMFLAHRYDIEMEGACEASLACS 98


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 544 LVIRDFLLIWALKNKCDIVSIILCFYCNCIL 452
           ++  DF L++     C  VS   C++C+C +
Sbjct: 82  VIFSDFSLVYIFHGPCKYVSPWFCYFCHCFM 112


>AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical
           protein Y38F1A.9 protein.
          Length = 108

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/88 (25%), Positives = 33/88 (37%)
 Frame = +2

Query: 344 SLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQ 523
           SL +  DG   + C  N +    +    K  +  GD+    IK       VT   ++P Q
Sbjct: 12  SLIIAPDGSVLFECICNANPQPTVKWFLKDKELTGDRYVSKIKKMVGKFTVTLHIKNPTQ 71

Query: 524 EKVSDYEMKLMNLDLEHLGIPETEYSCT 607
           E    Y++   N    H    +  Y CT
Sbjct: 72  EDQGVYKVTATNTHGSHSVEQQYIYKCT 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,644,583
Number of Sequences: 27780
Number of extensions: 390957
Number of successful extensions: 915
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)