Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D03
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   4.7  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    27   4.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   8.2  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   8.2  
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces...    26   8.2  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/79 (22%), Positives = 29/79 (36%)
 Frame = -3

Query: 860 LRSNPSHDSHRKTT*GESVISTPIFERGDPTGPIRERYHVHRATSHATRESVGHCLLVIR 681
           L S  S  S        S  +TP F   + + P+ +     R  +          L  ++
Sbjct: 370 LSSYKSRASGNSLINDRSSTTTPTFVNSEASSPVHKNKRRRRIYAALLSRVASELLDRLQ 429

Query: 680 GGDVVPQGGLLAGASRGDH 624
            GD+   G + + A  GDH
Sbjct: 430 LGDITKDGLIYSNAFTGDH 448


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 562 TRQTLPGLNPARSYAPIGRATWSP 633
           T Q+ P  NPA   +P+G A+ SP
Sbjct: 343 TPQSSPNFNPAMRRSPVGAASRSP 366


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 297  QCAQVAIGCSRTAHQTAMRGSTKPSPQ-LATLTPKVRAFVERSAA 428
            Q A   I C  +A+ T  +  T      L T  P+VRAF+E S A
Sbjct: 1848 QAAYATIACFISAYDTPAKIVTPVYVSILKTYQPEVRAFIEFSLA 1892


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 356 PSHSSLVGGAAASNRHLST--LCRLPHVVFGDGLKM 255
           PS ++L GG A+ +  LST  L R PH    +G ++
Sbjct: 307 PSRATLTGGYASGSIGLSTPGLSRAPHYELDNGNRL 342


>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 341 LVGGAAASNRHLSTLCRLPHVVFGDGLKMQH 249
           +VG + AS    STLC+L H +F +G  + H
Sbjct: 7   IVGVSGASCSGKSTLCQLLHAIF-EGSSLVH 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,435
Number of Sequences: 5004
Number of extensions: 62083
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)