Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_D03
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1240 - 28612250-28613704 33 0.40
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 32 0.70
12_02_0305 - 17235832-17236379,17237345-17237444 30 2.1
04_04_0140 - 23073032-23073130,23073270-23073338,23073448-230735... 30 2.8
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 3.8
01_06_0640 + 30779457-30779623,30779707-30779828,30779959-307800... 29 3.8
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 29 6.6
11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653... 29 6.6
11_03_0010 - 8922361-8922375,8923888-8924610 29 6.6
07_01_0636 + 4761858-4762421,4763596-4763819,4763961-4764309,476... 29 6.6
04_04_0462 + 25393733-25394347 29 6.6
01_01_0070 - 542603-542686,542803-543441 29 6.6
09_01_0183 - 2652173-2653924 28 8.7
09_01_0013 - 355103-355435 28 8.7
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 28 8.7
04_03_0070 + 10677677-10679989 28 8.7
02_05_0683 + 30877731-30878243 28 8.7
>06_03_1240 - 28612250-28613704
Length = 484
Score = 32.7 bits (71), Expect = 0.40
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 289 RRHNVLKWRLDAAAPPT--KLLCEGRRSLLHSWPLSLQRFARSWSAALLCASQSTCTYAT 462
RRH VL +RL + PPT LL ++L S LS S+ AA+ C + +A
Sbjct: 97 RRHAVLSFRLLDSLPPTHPHLLSTPALAVLLSTALSASAPGASFDAAVTCFDSAARVWAR 156
Query: 463 APRQ 474
A R+
Sbjct: 157 AGRE 160
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +1
Query: 577 PGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRI 687
P PA S A + AT SPR A +PPW T PP I
Sbjct: 91 PMPTPAASSA-LAPATSSPRPASPPTPPWTTAPPPGI 126
>12_02_0305 - 17235832-17236379,17237345-17237444
Length = 215
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 553 PGQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRIT-RRQCPTDSLVA 723
P R + P ++ + AP+ + P +AP++ P T PP + QCP ++++A
Sbjct: 83 PSPRRASPPSVSVEPTPAPVIAPSPPPVVAPSQPPTIAPTQPPTPSGGSQCPRENVIA 140
>04_04_0140 -
23073032-23073130,23073270-23073338,23073448-23073539,
23073637-23074550,23074646-23074779,23075003-23075058,
23077556-23077646
Length = 484
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -1
Query: 433 HRAALRSTNARTFGVRVASCGEGFVDPRIAVWWAVRLHPI 314
HR+ L + V GEG +PR A WW H +
Sbjct: 35 HRSDLSMVTSSVLPKVVDDAGEGEANPRRAKWWYATFHSV 74
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 631 PRLAPARSPPWGTTSPPRITRRQCPTD 711
P++ P SPP T SPP IT P D
Sbjct: 616 PKITPYPSPPEVTPSPPEITPYPSPPD 642
>01_06_0640 +
30779457-30779623,30779707-30779828,30779959-30780014,
30780147-30780254
Length = 150
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +1
Query: 556 GQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRQ 699
G R+ L GL A S + +P A ARSP S PR TRR+
Sbjct: 6 GGARRALAGLRSASSSRAFSQP--APAAAAARSPELAAFSLPRSTRRR 51
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 284 EEDGTMCSSGDWMQPHRPPNCYARVDEAFSTAGHSHSKGSRVRGAQR 424
++DG M G +QP RP + R D+ + G + SK +RG +R
Sbjct: 417 DDDGGMFGQGKGVQPGRPGSAGMRSDDGGDSDG-ARSKLVSLRGGRR 462
>11_04_0305 -
16162063-16162096,16162282-16164365,16165283-16165351,
16168317-16169288,16169548-16169650,16170427-16170509
Length = 1114
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 564 PADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPD-YEKAVSDRFPGCMRGRTM 740
P D+ +++ +I + ++V ++ K Y+S D + A+ + F R +
Sbjct: 676 PDDIGKMKFLMYIDINACGNLVQLPKSILKLRQLRYLSLGDTHINAIPEGFHNLSSIRKL 735
Query: 741 YVIPFSNGPCGISSLEDWC 797
Y P G G+S E+WC
Sbjct: 736 YGFPAHMGTGGVSPKENWC 754
>11_03_0010 - 8922361-8922375,8923888-8924610
Length = 245
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 656 GLLAG--ASRGDHVALPIGAY-ERAGFNPGNVC 567
G AG A D A IGAY AG+NPG +C
Sbjct: 61 GAAAGMAADAADSAAANIGAYIPEAGYNPGKLC 93
>07_01_0636 +
4761858-4762421,4763596-4763819,4763961-4764309,
4764648-4765331
Length = 606
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 580 GLNPARSYAPIGRATWSPRLAPARSPPWG 666
G++P+R A +P LAPA +P WG
Sbjct: 163 GVSPSRVAVTAAAAEPTPALAPAPAPEWG 191
>04_04_0462 + 25393733-25394347
Length = 204
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 668 VPQGGLLAGASRGDHVALPIGAYERAGFNPGNVCRVC 558
VP GG G G H + +Y A G+V RVC
Sbjct: 96 VPPGGKAGGVCLGGHSVAAVVSYGGAFLGEGSVGRVC 132
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +1
Query: 571 TLPGLNPARSYAPIGRATWSPRLAPARSPP----WGTTSPPRITRRQCP 705
T P +P P AT +P +APA++PP +PP T ++ P
Sbjct: 43 TAPAKSPPAPATPAPTATPTPPVAPAKAPPVAPAVAPVTPPPPTPKKAP 91
>09_01_0183 - 2652173-2653924
Length = 583
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 377 LWRRLRRPSHSSLVGGAAASNRHLSTLCRLPH-VVFGDG 264
L R L SHS+L AAA+ HL+T C VVF +G
Sbjct: 207 LLRLLDASSHSALRDRAAATVAHLATACVASRKVVFDEG 245
>09_01_0013 - 355103-355435
Length = 110
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 592 ARSYAPIGRATWSPRLAPARSPPW 663
AR A GR W PR P R P W
Sbjct: 28 ARGGAAGGRRAWRPRWRPQRRPRW 51
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 587 IPHVHMLRSGERRGPLGSRRPEVRPGELH 673
IPH L + + P+ S++P+VR E+H
Sbjct: 158 IPHSEHLNNDLTQDPVASKKPKVRKKEIH 186
>04_03_0070 + 10677677-10679989
Length = 770
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 547 GWPGQTRQTLPGLNPARSYAPIGRATWS-PRLAPARSPPWGTTSPPRITRRQC 702
G R+ L R+ A G+ W L P PP G+ PP+ R +C
Sbjct: 29 GEEAAARKRYDALMQVRAKAVKGKGAWYWAHLEPVLVPPPGSGVPPKAARLRC 81
>02_05_0683 + 30877731-30878243
Length = 170
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 680 GGDVVPQGGLLAG-ASRGDHVALPIGAYERAGFNPGNVC 567
GG GG A A+RG VA+P+ A A + GN C
Sbjct: 126 GGSGASDGGSTAAMAARGSTVAVPVAAAAVARGSRGNTC 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,935,026
Number of Sequences: 37544
Number of extensions: 516643
Number of successful extensions: 2062
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2059
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -