Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D02
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.3  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   6.3  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    26   8.3  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   8.3  

>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 10  IPTHYREFLKILSFLTVF 63
           I THY+ +L+I +FLT+F
Sbjct: 216 IKTHYKTWLRIHTFLTLF 233


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -1

Query: 438 WNMHQVAILGHYHLELKEYHLEWFSLIIDNRPHQN-EHWF*GSDSYLRLSFFLHCHHSQQ 262
           W M       +  +E  +  LE+F LI ++ P QN   W+     YL L  + H     +
Sbjct: 431 WGMLYDIAKAYMDIERLDLALEYFVLICNHEPAQNIGLWYNMGVCYLELKEYEHAQQCME 490


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +2

Query: 458 KKKXXKKXKKKKXKKKXK 511
           KKK  KK KK K KKK K
Sbjct: 145 KKKKEKKEKKDKLKKKSK 162


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 219  STLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKT 326
            STL    +++  S S+G G S    + +  N++P T
Sbjct: 3649 STLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPST 3684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,255
Number of Sequences: 5004
Number of extensions: 38953
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)