Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D01
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   2.8  
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    27   4.8  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -2

Query: 700 HAQTDXHYXCFGALNXXFTIYIESKLLFXNEIRSDQSECGQWERE 566
           +A+   H+   G     FTI    +  F   I S   E G W+R+
Sbjct: 469 NARVPMHFRVLGKYEEEFTIVTVDRHFFLASIFSRNDEKGTWDRQ 513


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 583 GQWEREGDRSSSVTVV-LVAHSAGLDLRAVSDRGVGGXLDXSAGVL 449
           G W  EGD++S+V V    A + G+D+   +  G G  LD + G++
Sbjct: 127 GLWS-EGDKTSAVLVQNWTAVAYGVDIHPAASIGDGLFLDHALGIV 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,237
Number of Sequences: 5004
Number of extensions: 33155
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)