Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D01
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0679 - 26227654-26227770,26234067-26236217                       31   1.7  
12_02_0501 + 19742007-19742143,19742253-19742398,19742559-197425...    29   6.7  

>11_06_0679 - 26227654-26227770,26234067-26236217
          Length = 755

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 194 CFXHAPVGPAKAECYT-FCHVYFINXYSRGQC 102
           C  H P G +  ECY+ FCH++    +S  +C
Sbjct: 614 CQTHGPGGHSTEECYSKFCHIHGPGGHSTEEC 645


>12_02_0501 +
           19742007-19742143,19742253-19742398,19742559-19742596,
           19742715-19742765,19743010-19743125,19743348-19743447,
           19743537-19743572,19743724-19743774,19743906-19744029,
           19744319-19744444,19744572-19744729
          Length = 360

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 327 RR*SVLKLIESLGVAFXWGXGALERVPAVXILFTVTXVAA*CNSLF 190
           RR + + L+E+LG+A     GA+   PA+ IL     +   C +++
Sbjct: 74  RRLAAIGLLEALGLAAGMSAGAMLPGPAIPILSQCNTIYGFCKTIY 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,842,757
Number of Sequences: 37544
Number of extensions: 235416
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)