Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_C23
         (885 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q34937 Cluster: MURF2 protein; n=9; Trypanosomatidae|Re...    36   1.0  
UniRef50_UPI00006A1716 Cluster: UPI00006A1716 related cluster; n...    34   4.2  
UniRef50_Q5KFW4 Cluster: Topoisomerase 1-associated factor 1; n=...    34   4.2  
UniRef50_Q18B81 Cluster: Putative membrane protein precursor; n=...    34   5.5  
UniRef50_P04540 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    34   5.5  
UniRef50_Q189V8 Cluster: Putative transcription antiterminator; ...    33   9.7  

>UniRef50_Q34937 Cluster: MURF2 protein; n=9; Trypanosomatidae|Rep:
           MURF2 protein - Leishmania tarentolae (Sauroleishmania
           tarentolae)
          Length = 355

 Score = 36.3 bits (80), Expect = 1.0
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 8/179 (4%)
 Frame = +3

Query: 87  HLIXFHLYFILKVFHSYCCNFIKKTCIFYFVSCFI--YIFSVV*FTSVCNYSNMXXXXXX 260
           HLI +  + I+ +F+   C+++   C+FYF+ CFI  +IF V+    V  Y  +      
Sbjct: 136 HLISY--FGIINMFNVIFCSYL--FCLFYFIICFIFCFIFFVIRCLFVIIYDFLFFNFDI 191

Query: 261 XXNSLQHLRYYVYSILFSTYSVNSMYSNIL*FYIYT*IHFLHLTY-ELFFKHSFEE*FMC 437
             + L     Y+  I F       ++S I  F+ +  I  L+  +  LFF  +    F+ 
Sbjct: 192 YISFLMCDIIYIDYICFLLIYFGFIFSFITGFFCF--IFVLNYVFLVLFFVLALFFGFLF 249

Query: 438 *VNYIMYHLIVF*HFLISAV-----GYILNS*FIFHFCQIMSYPIIFVFVISSYYICTY 599
            ++Y ++  +++  F +  +       +L S  IF          IFVF++  + IC +
Sbjct: 250 -LSYGLFTFLIYYFFWLYIIYSRSCFILLQSVVIFFKFLYFDVFFIFVFLLILFIICFF 307


>UniRef50_UPI00006A1716 Cluster: UPI00006A1716 related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00006A1716 UniRef100 entry -
           Xenopus tropicalis
          Length = 158

 Score = 34.3 bits (75), Expect = 4.2
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
 Frame = +3

Query: 288 YYVYSILFSTYSVNSMYSNIL*FYIYT*IH--FLHLTYELFFKHSFEE*FMC*VNY--IM 455
           YY+Y++ +  Y+   M   I+ +Y+Y  I+   L + Y L+   ++   F+C   Y  I 
Sbjct: 36  YYLYALSYYLYATIYMRLLIICYYLYVTIYIRLLFICYYLYAATNYMLLFICYYLYATIY 95

Query: 456 YHLIVF*HFLISAVGYILNS*FIFHFCQIMSYPIIFVF-VISSYYI 590
            HL+   ++L +A  Y+     +   C    Y  I++   I  YY+
Sbjct: 96  MHLLFICYYLYAATIYMR----LLFICGYYLYATIYMLPFICGYYL 137


>UniRef50_Q5KFW4 Cluster: Topoisomerase 1-associated factor 1; n=3;
           Filobasidiella neoformans|Rep: Topoisomerase
           1-associated factor 1 - Cryptococcus neoformans
           (Filobasidiella neoformans)
          Length = 1074

 Score = 34.3 bits (75), Expect = 4.2
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +3

Query: 273 LQHLRYYVYSILFSTYSVNSMYSNIL*FYIYT*IHFLHLTYELFFKHSFEE*FM 434
           LQH  YY Y IL S  +V   Y N    Y+ + IHF ++   +  K+S  + FM
Sbjct: 512 LQHQLYYNYDILDSALAVVREYKNQSIAYLDSIIHFAYVLLRMLEKYSKTKAFM 565


>UniRef50_Q18B81 Cluster: Putative membrane protein precursor; n=2;
           Clostridium difficile|Rep: Putative membrane protein
           precursor - Clostridium difficile (strain 630)
          Length = 201

 Score = 33.9 bits (74), Expect = 5.5
 Identities = 22/69 (31%), Positives = 37/69 (53%)
 Frame = +2

Query: 86  TFNPVPLVFYFKSLS*LLLQFHKKNMHILFCVVFYIYFFCSVIYFSL*LFKYEKKNKKIQ 265
           T N   L   FKS+  +L+   K N+ I+ C +  I    S+ YF   +++++KKN+K  
Sbjct: 107 TINSCILALKFKSIKMILIILFK-NLIIIPCAI--ILALISLSYFKEMVYEFKKKNRKNM 163

Query: 266 KFIATLEIL 292
           +F+    IL
Sbjct: 164 QFLIKRYIL 172


>UniRef50_P04540 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=4; Trypanosomatidae|Rep: NADH-ubiquinone
           oxidoreductase chain 5 - Trypanosoma brucei brucei
          Length = 590

 Score = 33.9 bits (74), Expect = 5.5
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
 Frame = +3

Query: 81  FRHLIXFHLYFILKVFHSYCCNFI---KKTCIFY----FVSCFIYIFSVV*FTSVCNYSN 239
           + + + F L F+ K F    C F+    + C+ Y       C + IF ++ F  +  +S+
Sbjct: 425 YNYFLLFFLMFVFKCFCLVDCLFLLFDYECCLVYCLISLYMCILSIFFIIDFVCIFVFSS 484

Query: 240 MXXXXXXXXNSLQHLRYYVYSILFSTYSVNSMYSNIL*FYIYT*IHFLHLTYELFF 407
                    N        ++ ++F   SV  +Y   L FY +  I  + L + +FF
Sbjct: 485 YCVFWSFFLNFYNFFDIAIF-VVFLILSVGFLYYGCLFFYFFN-IDCIMLFWRIFF 538


>UniRef50_Q189V8 Cluster: Putative transcription antiterminator;
           n=3; Clostridium difficile|Rep: Putative transcription
           antiterminator - Clostridium difficile (strain 630)
          Length = 661

 Score = 33.1 bits (72), Expect = 9.7
 Identities = 12/33 (36%), Positives = 24/33 (72%)
 Frame = +1

Query: 679 YVWQSINRNIKYYFELSLIRNI*GYVFDKIVKK 777
           Y+ + + R+++ Y  +S++RN+ GY F+KI K+
Sbjct: 211 YITEQVLRDVERYIIMSVLRNLNGYKFEKIDKR 243


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 675,915,621
Number of Sequences: 1657284
Number of extensions: 12341720
Number of successful extensions: 26214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26121
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79522270534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)