Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_C23
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    28   1.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   4.7  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   6.2  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   6.2  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    26   8.2  

>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +2

Query: 110 FYFKSLS*LLLQFHKKNMHILFCVVFYI--YFFCSVIYFSL*LFKYE-KKNKKIQKFIAT 280
           +Y      L+    K  M +    +F+I  + FC    FSL LF Y+ K+ ++ +KF+  
Sbjct: 447 YYMDPYGKLIASPSKHWMRLFPNKLFFILSFIFCLFFLFSLVLFGYDPKRRQRFKKFLLR 506

Query: 281 LE 286
           L+
Sbjct: 507 LQ 508


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 422 RIVHVLSKLYYVPFNCFLTFSH*CGWVYFKLIIHISFLS 538
           R+  +LSKLY VPFN  L F    G    + +IH   L+
Sbjct: 608 RLRGLLSKLYVVPFNRNLLFKRLMG---IRFVIHYRSLA 643


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 486 ISAVGYILNS*FIFHFCQIMSYPIIFVFVISSYYICTYCI 605
           IS  G  LN+ +    C++ SY   F+ V++S ++ + CI
Sbjct: 133 ISGTGPSLNASYK-SLCKLYSYENSFIVVLNSIFVVSSCI 171


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 81  FRHLIXFHLYFILKVFHSYCCNFIKKTCIFYFVSCFIYIFSVV*FTSV 224
           F H   FH+   +   H Y  N +   C F++ S F + FS + FTS+
Sbjct: 85  FSHCRRFHIAIFI---HPYDSNVVPFFCFFFYFSLFSF-FSFL-FTSL 127


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 298 IVFYLVHIR*IQCIVIFFNFIYILKFISCI*HMNYSSNIHLKN 426
           IVF LV I  +     +  F  IL  +SC+ +   + N  LKN
Sbjct: 40  IVFPLVSIFSLPQKQTYHRFFSILSLVSCLAYFTMACNYGLKN 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,220
Number of Sequences: 5004
Number of extensions: 60672
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)