Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_C22
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    30   0.50 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    28   1.5  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    27   2.7  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   3.5  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   6.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   8.1  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    26   8.1  

>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 403 SGKFEDLLIALLTPLPKFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIKQAYTAIY 582
           SG    LL+++L+       K  H     +G     LI V C  +  E+HSI   Y+ +Y
Sbjct: 12  SGSMHALLMSILSK------KSYHPTSYRVGGYRNQLIRVFCVWACIELHSINPWYSGMY 65


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +1

Query: 613  DTSGNFNRLMTSLCVGNRSEDFTVDQNRARDDARKLLQAG---ELRMGTDESTFNMILCS 783
            D +   N+ M S C   R EDF   Q++  D+   LLQ      LR    ++TFN  + +
Sbjct: 1510 DNAAEVNQFMLS-CFFCRWEDFLKQQHKLADEEASLLQFSRLEHLRKQLAQNTFNENILN 1568

Query: 784  RS 789
             S
Sbjct: 1569 ES 1570


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 768 HDPVLSLVPSAGGHLPGVRILDRT 839
           HD V    PS+ G+ P +R+ DRT
Sbjct: 10  HDKVFPYGPSSNGYNPVIRLTDRT 33


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -2

Query: 642 HQTIEISRCVTAYIVFKDFTINCCVCLFDAVDLIVGHSAHYFDEDAFVGTDPDHGLV 472
           HQ  E+ R +   +      + C  CL D  D +  HS        F+G+ P   LV
Sbjct: 171 HQYCEMVRSLLQSMGHSPELVQCITCLPDVADHLTSHSG--IKHITFIGSQPIAKLV 225


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 451  KFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIKQAYTAIYGKILEDD 603
            K  AK++ +       +E  + E M  MS++E+H + +++  +    L+DD
Sbjct: 868  KQMAKDIMQEEQYKNANEQYIYEDMEVMSDFELHRLCRSFPTLQSYTLKDD 918


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 119  LCNILISCFISKDIGEGKIMFPNQQSRPTV 208
            LC +     + K  G G +  PN +S PT+
Sbjct: 1255 LCAMRFFSLLRKSSGIGNLKIPNMKSNPTI 1284


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 286 SSVPKPFMALRRTPASSRGLNGFXREDSRSRLLIRKHDFAFADVL*NKTTN 134
           SS P     LRR+  S  G  G     S S +L  + DFA+A +  +K T+
Sbjct: 277 SSPPPKESLLRRSSRSLIGTVGGYLPQSVSGMLDPERDFAYAHIPGDKVTS 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,446,363
Number of Sequences: 5004
Number of extensions: 69924
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)