Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_C22
(880 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29443-8|CAE45742.1| 455|Caenorhabditis elegans Hypothetical pr... 195 3e-50
Z29443-7|CAA82571.2| 497|Caenorhabditis elegans Hypothetical pr... 195 3e-50
U40483-1|AAA99775.1| 322|Caenorhabditis elegans NEX1 annexin pr... 130 1e-30
U00064-7|AAB52702.1| 322|Caenorhabditis elegans Annexin family ... 130 1e-30
Z32680-3|CAA83598.1| 317|Caenorhabditis elegans Hypothetical pr... 115 5e-26
U88315-15|AAB42365.1| 351|Caenorhabditis elegans Annexin family... 62 5e-10
Z47357-5|CAA87424.1| 446|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z68009-2|CAA92004.2| 891|Caenorhabditis elegans Hypothetical pr... 28 7.7
>Z29443-8|CAE45742.1| 455|Caenorhabditis elegans Hypothetical
protein T07C4.9b protein.
Length = 455
Score = 195 bits (476), Expect = 3e-50
Identities = 92/176 (52%), Positives = 123/176 (69%)
Frame = +1
Query: 352 FKTLYGKDLISDIKSETSGKFEDLLIALLTPLPKFYAKELHEAMVGIGTDEGVLIEVMCT 531
FK +YGKDLI ++K E G FEDL++AL+ + AK+LH AM G+GT E VLIE+M +
Sbjct: 191 FKVMYGKDLIKELKGELHGDFEDLILALMDAPAIYDAKQLHRAMEGLGTKESVLIEIMTS 250
Query: 532 MSNYEIHSIKQAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRSEDFTVDQNRARDDA 711
+N +I ++ AY ++ K LE D+ G+TSG+F RL+ SLC G R E D RA DA
Sbjct: 251 RTNAQIQQVRDAYKMLFKKDLERDLIGETSGHFKRLLVSLCAGGRDESSQTDGLRANQDA 310
Query: 712 RKLLQAGELRMGTDESTFNMILCSRSYPQLXAIFQEYEYLTGHEIEHAIKSEFSGD 879
R+LLQAGE R+GTDESTFN IL S+++ QL +F+EY+ + H IE AI+ EFSGD
Sbjct: 311 RRLLQAGEKRLGTDESTFNAILASQNFSQLRLVFEEYQKASNHSIEKAIEFEFSGD 366
Score = 64.1 bits (149), Expect = 1e-10
Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Frame = +1
Query: 388 IKSETSGKFEDLLIALLTPL---PKFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSI 558
I+ E SG D L+A++ + P ++AK LH++M G+GT + LI + T + Y++ I
Sbjct: 359 IEFEFSGDIRDGLLAVIAVIRNRPAYFAKLLHDSMKGLGTRDNDLIRLCVTRAEYDMGDI 418
Query: 559 KQAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNR 666
+ + ++Y LE+ I+GD SG + + +L GNR
Sbjct: 419 RNMFQSLYRTSLENMIKGDCSGAYKEGLIALVNGNR 454
Score = 59.7 bits (138), Expect = 3e-09
Identities = 40/139 (28%), Positives = 72/139 (51%)
Frame = +1
Query: 460 AKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIKQAYTAIYGKILEDDIRGDTSGNFNRL 639
A+ L +AM G+G + +I ++C +N++ I +A+ +YGK L +++G+ G+F L
Sbjct: 155 AEVLRKAMKGLGCNNSKVISILCQRTNWQRQEISKAFKVMYGKDLIKELKGELHGDFEDL 214
Query: 640 MTSLCVGNRSEDFTVDQNRARDDARKLLQAGELRMGTDESTFNMILCSRSYPQLXAIFQE 819
+ +L A DA++L +A E +GT ES I+ SR+ Q+ +
Sbjct: 215 ILALM-----------DAPAIYDAKQLHRAME-GLGTKESVLIEIMTSRTNAQIQQVRDA 262
Query: 820 YEYLTGHEIEHAIKSEFSG 876
Y+ L ++E + E SG
Sbjct: 263 YKMLFKKDLERDLIGETSG 281
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = +3
Query: 225 FNPREDAGVLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIA 344
FN DA VLRKAMKG G + +I +L +R+N QR I+
Sbjct: 149 FNSNADAEVLRKAMKGLGCNNSKVISILCQRTNWQRQEIS 188
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 240 DAGVLRKAMKGFGTDEKSIIQVLTKRSNEQ 329
DA L +AM+G GT E +I+++T R+N Q
Sbjct: 226 DAKQLHRAMEGLGTKESVLIEIMTSRTNAQ 255
>Z29443-7|CAA82571.2| 497|Caenorhabditis elegans Hypothetical
protein T07C4.9a protein.
Length = 497
Score = 195 bits (476), Expect = 3e-50
Identities = 92/176 (52%), Positives = 123/176 (69%)
Frame = +1
Query: 352 FKTLYGKDLISDIKSETSGKFEDLLIALLTPLPKFYAKELHEAMVGIGTDEGVLIEVMCT 531
FK +YGKDLI ++K E G FEDL++AL+ + AK+LH AM G+GT E VLIE+M +
Sbjct: 233 FKVMYGKDLIKELKGELHGDFEDLILALMDAPAIYDAKQLHRAMEGLGTKESVLIEIMTS 292
Query: 532 MSNYEIHSIKQAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRSEDFTVDQNRARDDA 711
+N +I ++ AY ++ K LE D+ G+TSG+F RL+ SLC G R E D RA DA
Sbjct: 293 RTNAQIQQVRDAYKMLFKKDLERDLIGETSGHFKRLLVSLCAGGRDESSQTDGLRANQDA 352
Query: 712 RKLLQAGELRMGTDESTFNMILCSRSYPQLXAIFQEYEYLTGHEIEHAIKSEFSGD 879
R+LLQAGE R+GTDESTFN IL S+++ QL +F+EY+ + H IE AI+ EFSGD
Sbjct: 353 RRLLQAGEKRLGTDESTFNAILASQNFSQLRLVFEEYQKASNHSIEKAIEFEFSGD 408
Score = 64.1 bits (149), Expect = 1e-10
Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Frame = +1
Query: 388 IKSETSGKFEDLLIALLTPL---PKFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSI 558
I+ E SG D L+A++ + P ++AK LH++M G+GT + LI + T + Y++ I
Sbjct: 401 IEFEFSGDIRDGLLAVIAVIRNRPAYFAKLLHDSMKGLGTRDNDLIRLCVTRAEYDMGDI 460
Query: 559 KQAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNR 666
+ + ++Y LE+ I+GD SG + + +L GNR
Sbjct: 461 RNMFQSLYRTSLENMIKGDCSGAYKEGLIALVNGNR 496
Score = 59.7 bits (138), Expect = 3e-09
Identities = 40/139 (28%), Positives = 72/139 (51%)
Frame = +1
Query: 460 AKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIKQAYTAIYGKILEDDIRGDTSGNFNRL 639
A+ L +AM G+G + +I ++C +N++ I +A+ +YGK L +++G+ G+F L
Sbjct: 197 AEVLRKAMKGLGCNNSKVISILCQRTNWQRQEISKAFKVMYGKDLIKELKGELHGDFEDL 256
Query: 640 MTSLCVGNRSEDFTVDQNRARDDARKLLQAGELRMGTDESTFNMILCSRSYPQLXAIFQE 819
+ +L A DA++L +A E +GT ES I+ SR+ Q+ +
Sbjct: 257 ILALM-----------DAPAIYDAKQLHRAME-GLGTKESVLIEIMTSRTNAQIQQVRDA 304
Query: 820 YEYLTGHEIEHAIKSEFSG 876
Y+ L ++E + E SG
Sbjct: 305 YKMLFKKDLERDLIGETSG 323
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = +3
Query: 225 FNPREDAGVLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIA 344
FN DA VLRKAMKG G + +I +L +R+N QR I+
Sbjct: 191 FNSNADAEVLRKAMKGLGCNNSKVISILCQRTNWQRQEIS 230
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 240 DAGVLRKAMKGFGTDEKSIIQVLTKRSNEQ 329
DA L +AM+G GT E +I+++T R+N Q
Sbjct: 268 DAKQLHRAMEGLGTKESVLIEIMTSRTNAQ 297
>U40483-1|AAA99775.1| 322|Caenorhabditis elegans NEX1 annexin
protein.
Length = 322
Score = 130 bits (314), Expect = 1e-30
Identities = 70/178 (39%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Frame = +1
Query: 352 FKTLYGKDLISDIKSETSGKFEDLLIALL-TPLPKFYAKELHEAMVGIGTDEGVLIEVMC 528
+K YGKD+I + + SG E + AL+ TPL + K+L AM G+GTDE VLIE++C
Sbjct: 54 YKLKYGKDIIQALDKKFSGDLEKAIFALMETPLD-YDVKQLKAAMKGLGTDEAVLIEILC 112
Query: 529 TMSNYEIHSIKQAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRSEDFTVDQNRARDD 708
+ + ++ +I+ Y YGK LE DI GDTSG F L+ SL G++ + +A+DD
Sbjct: 113 SRTVDQLRAIRVTYEKEYGKALEADIAGDTSGEFRDLLVSLVTGSKDGSHDTNDAQAKDD 172
Query: 709 ARKLLQAGELRMGTDEST-FNMILCSRSYPQLXAIFQEYEYLTGHEIEHAIKSEFSGD 879
A +L G+ ++ + T F IL +++ QL +F ++ L G IE +I+ EFSGD
Sbjct: 173 AVRLFADGKAKLAKKDGTHFLHILATQNQYQLRKVFAYFQELAGGSIEKSIEKEFSGD 230
Score = 68.5 bits (160), Expect = 6e-12
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Frame = +1
Query: 352 FKTLYGKDLISDIKSETSGKFEDLLIALL---TPLPKFYAKELHEAMVGIGTDEGVLIEV 522
F+ L G + I+ E SG + + ++ + KF+A++LH +M G+GT + LI V
Sbjct: 211 FQELAGGSIEKSIEKEFSGDLQKSYLTIVRAASDKQKFFAQQLHASMKGLGTRDNDLIRV 270
Query: 523 MCTMSNYEIHSIKQAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRS 669
+ T S ++ IK + +Y K L D ++GDTSG + + S+ GN +
Sbjct: 271 IVTRSEVDLELIKAEFQELYSKSLADTVKGDTSGAYRDALLSIINGNHA 319
Score = 32.3 bits (70), Expect = 0.47
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 240 DAGVLRKAMKGFGTDEKSIIQVLTKRSNEQ 329
D L+ AMKG GTDE +I++L R+ +Q
Sbjct: 89 DVKQLKAAMKGLGTDEAVLIEILCSRTVDQ 118
Score = 31.5 bits (68), Expect = 0.82
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 349 KFKTLYGKDLISDIKSETSGKFEDLLIALL 438
+F+ LY K L +K +TSG + D L++++
Sbjct: 285 EFQELYSKSLADTVKGDTSGAYRDALLSII 314
>U00064-7|AAB52702.1| 322|Caenorhabditis elegans Annexin family
protein 1 protein.
Length = 322
Score = 130 bits (314), Expect = 1e-30
Identities = 70/178 (39%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Frame = +1
Query: 352 FKTLYGKDLISDIKSETSGKFEDLLIALL-TPLPKFYAKELHEAMVGIGTDEGVLIEVMC 528
+K YGKD+I + + SG E + AL+ TPL + K+L AM G+GTDE VLIE++C
Sbjct: 54 YKLKYGKDIIQALDKKFSGDLEKAIFALMETPLD-YDVKQLKAAMKGLGTDEAVLIEILC 112
Query: 529 TMSNYEIHSIKQAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRSEDFTVDQNRARDD 708
+ + ++ +I+ Y YGK LE DI GDTSG F L+ SL G++ + +A+DD
Sbjct: 113 SRTVDQLRAIRVTYEKEYGKALEADIAGDTSGEFRDLLVSLVTGSKDGSHDTNDAQAKDD 172
Query: 709 ARKLLQAGELRMGTDEST-FNMILCSRSYPQLXAIFQEYEYLTGHEIEHAIKSEFSGD 879
A +L G+ ++ + T F IL +++ QL +F ++ L G IE +I+ EFSGD
Sbjct: 173 AVRLFADGKAKLAKKDGTHFLHILATQNQYQLRKVFAYFQELAGGSIEKSIEKEFSGD 230
Score = 68.5 bits (160), Expect = 6e-12
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Frame = +1
Query: 352 FKTLYGKDLISDIKSETSGKFEDLLIALL---TPLPKFYAKELHEAMVGIGTDEGVLIEV 522
F+ L G + I+ E SG + + ++ + KF+A++LH +M G+GT + LI V
Sbjct: 211 FQELAGGSIEKSIEKEFSGDLQKSYLTIVRAASDKQKFFAQQLHASMKGLGTRDNDLIRV 270
Query: 523 MCTMSNYEIHSIKQAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRS 669
+ T S ++ IK + +Y K L D ++GDTSG + + S+ GN +
Sbjct: 271 IVTRSEVDLELIKAEFQELYSKSLADTVKGDTSGAYRDALLSIINGNHA 319
Score = 32.3 bits (70), Expect = 0.47
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 240 DAGVLRKAMKGFGTDEKSIIQVLTKRSNEQ 329
D L+ AMKG GTDE +I++L R+ +Q
Sbjct: 89 DVKQLKAAMKGLGTDEAVLIEILCSRTVDQ 118
Score = 31.5 bits (68), Expect = 0.82
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 349 KFKTLYGKDLISDIKSETSGKFEDLLIALL 438
+F+ LY K L +K +TSG + D L++++
Sbjct: 285 EFQELYSKSLADTVKGDTSGAYRDALLSII 314
>Z32680-3|CAA83598.1| 317|Caenorhabditis elegans Hypothetical
protein C28A5.3 protein.
Length = 317
Score = 115 bits (276), Expect = 5e-26
Identities = 63/176 (35%), Positives = 94/176 (53%)
Frame = +1
Query: 352 FKTLYGKDLISDIKSETSGKFEDLLIALLTPLPKFYAKELHEAMVGIGTDEGVLIEVMCT 531
+KT YGKDL +IK SG FED L+ALL K EL+ ++ G+GT+E LIE++ T
Sbjct: 52 YKTRYGKDLEDEIKKAFSGDFEDFLVALLQTPTKLDVTELNRSVKGLGTNEKNLIEILTT 111
Query: 532 MSNYEIHSIKQAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRSEDFTVDQNRARDDA 711
+N EI + K Y Y K LED I DTSG+F RL+ + R E D + A
Sbjct: 112 RTNEEIEAAKNTYFMTYSKSLEDAISADTSGDFRRLLIVILQAKREEGGFADTFKVGPHA 171
Query: 712 RKLLQAGELRMGTDESTFNMILCSRSYPQLXAIFQEYEYLTGHEIEHAIKSEFSGD 879
++L++ + + G ++ I + + + + +E E +G E + I E SGD
Sbjct: 172 AQILKSFDKKSGVEKFDAFKIFATCNGAHIQKVIEEVERQSGKEFQKLIDKELSGD 227
Score = 51.2 bits (117), Expect = 9e-07
Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Frame = +1
Query: 367 GKDLISDIKSETSGKFEDLLIALLTPL---PKFYAKELHEAMVGIGTDEGVLIEVMCTMS 537
GK+ I E SG F++L+++L+ P+++A +H A G+GT + LI ++ + S
Sbjct: 213 GKEFQKLIDKELSGDFKNLVLSLIETSRNKPRYFANSIHLATKGMGTRDKDLIRILVSRS 272
Query: 538 NYEIHSIKQAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGN 663
++ I+ + ++GK L I+ + + +T L GN
Sbjct: 273 ENDLVIIEHEFQTLFGKPLTQLIKEECKAEYRDGLTMLVKGN 314
Score = 44.4 bits (100), Expect = 1e-04
Identities = 33/123 (26%), Positives = 58/123 (47%)
Frame = +1
Query: 511 LIEVMCTMSNYEIHSIKQAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRSEDFTVDQ 690
++E++ +++N + I+ Y YGK LED+I+ SG+F + +L D T +
Sbjct: 33 ILEILVSVNNTQRQMIRTPYKTRYGKDLEDEIKKAFSGDFEDFLVALLQTPTKLDVT-EL 91
Query: 691 NRARDDARKLLQAGELRMGTDESTFNMILCSRSYPQLXAIFQEYEYLTGHEIEHAIKSEF 870
NR+ +GT+E IL +R+ ++ A Y +E AI ++
Sbjct: 92 NRSVKG-----------LGTNEKNLIEILTTRTNEEIEAAKNTYFMTYSKSLEDAISADT 140
Query: 871 SGD 879
SGD
Sbjct: 141 SGD 143
Score = 37.5 bits (83), Expect = 0.013
Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 12/180 (6%)
Frame = +1
Query: 364 YGKDLISDIKSETSGKFEDLLIALLTP------LPKFYAKELHEAMVGIGTDE--GV--- 510
Y K L I ++TSG F LLI +L + H A + D+ GV
Sbjct: 128 YSKSLEDAISADTSGDFRRLLIVILQAKREEGGFADTFKVGPHAAQILKSFDKKSGVEKF 187
Query: 511 -LIEVMCTMSNYEIHSIKQAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRSEDFTVD 687
++ T + I + + GK + I + SG+F L+ SL +R
Sbjct: 188 DAFKIFATCNGAHIQKVIEEVERQSGKEFQKLIDKELSGDFKNLVLSLIETSR------- 240
Query: 688 QNRARDDARKLLQAGELRMGTDESTFNMILCSRSYPQLXAIFQEYEYLTGHEIEHAIKSE 867
N+ R A + A + MGT + IL SRS L I E++ L G + IK E
Sbjct: 241 -NKPRYFANSIHLATK-GMGTRDKDLIRILVSRSENDLVIIEHEFQTLFGKPLTQLIKEE 298
Score = 37.1 bits (82), Expect = 0.017
Identities = 14/30 (46%), Positives = 24/30 (80%)
Frame = +3
Query: 240 DAGVLRKAMKGFGTDEKSIIQVLTKRSNEQ 329
D L +++KG GT+EK++I++LT R+NE+
Sbjct: 87 DVTELNRSVKGLGTNEKNLIEILTTRTNEE 116
Score = 31.9 bits (69), Expect = 0.62
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 231 PREDAGVLRKAMKGFGTDEKSIIQVLTKRSNEQRLRIALEVQDVVWK 371
PR A + A KG GT +K +I++L RS + I E Q + K
Sbjct: 243 PRYFANSIHLATKGMGTRDKDLIRILVSRSENDLVIIEHEFQTLFGK 289
>U88315-15|AAB42365.1| 351|Caenorhabditis elegans Annexin family
protein 4 protein.
Length = 351
Score = 62.1 bits (144), Expect = 5e-10
Identities = 31/114 (27%), Positives = 57/114 (50%)
Frame = +1
Query: 352 FKTLYGKDLISDIKSETSGKFEDLLIALLTPLPKFYAKELHEAMVGIGTDEGVLIEVMCT 531
++ +Y + L+ D++ E G F ++ AL P P + A+ +++++ D V IE+ CT
Sbjct: 67 YEDMYSRKLLEDLEEECGGFFFEMCQALFKPAPNYDAQCVYKSLSNRHGDRSVAIEIACT 126
Query: 532 MSNYEIHSIKQAYTAIYGKILEDDIRGDTSGNFNRLMTSLCVGNRSEDFTVDQN 693
S ++ +++ Y Y K L+ D+ G ++M L NR E V N
Sbjct: 127 RSPRQMRALRDTYQIDYRKSLDKDLTVKVEGVVGKMMHLLLCNNREEGLGVRVN 180
>Z47357-5|CAA87424.1| 446|Caenorhabditis elegans Hypothetical
protein ZK1128.5 protein.
Length = 446
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 801 QLRVRARAQDHVERRFIGAHPKFTSLK*FSGVVTCPIL-IDREIFRSISHAKGCHQT 634
+LRV R D ++ +GA+P+ + FS ++ +D++I+ +H H+T
Sbjct: 135 ELRVEGRLLDDMQHPTVGANPRPAPKRKFSSFFKSLVIELDKDIYGPDNHLVEWHRT 191
>Z68009-2|CAA92004.2| 891|Caenorhabditis elegans Hypothetical
protein R09A8.2 protein.
Length = 891
Score = 28.3 bits (60), Expect = 7.7
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +1
Query: 439 TPLPKFYAKELHEAMVGIGTDEGVLIEVMCTMS----NYEIHSIKQAYTAIYGKILEDDI 606
TP FY E+ + + +GT + L M ++S N +Q + + K ++ +
Sbjct: 257 TPDKTFYFGEIPTSPINVGTHDDQLCNGMNSISGNTLNTSYEETRQLKNSDHVKQIDPQM 316
Query: 607 RGDTSGNFNRLMTSLCVGNRSEDFTVDQNRARDD 708
+G++ L S+ V N S + D N + DD
Sbjct: 317 KGNSVDAHKGLQFSMTVQN-SSCLSSDGNTSTDD 349
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,803,483
Number of Sequences: 27780
Number of extensions: 384762
Number of successful extensions: 909
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -