Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_C18
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.52 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   0.69 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   0.69 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 15/53 (28%), Positives = 16/53 (30%)
 Frame = +2

Query: 680 PPPPXFXXXGXXXPPPXGGGGGGXXXXXXPPPXXXXXXXXXXPPPPXPXEKXK 838
           PPP          PPP G  G G      PPP           P P    + K
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPK 804



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 748 PPPPPPXGGXXXPPPXXKXGGGG 680
           PPP P  GG   PPP     G G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAG 774



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/52 (32%), Positives = 17/52 (32%)
 Frame = -1

Query: 749 PPPPPPXGGXGXXXPXXKXXGGGXXXXXXXXXXGGXXXXPPPPXGGGXXPPP 594
           PPPPPP        P                  GG    PPPP   G  PPP
Sbjct: 732 PPPPPPAVIVPTPAPAP------IPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 748 PPPPPPXGGXXXPPP 704
           PPPPPP      PPP
Sbjct: 763 PPPPPPGVAGAGPPP 777



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 748 PPPPPPXGGXXXPPP 704
           PPPPP   G   PPP
Sbjct: 764 PPPPPGVAGAGPPPP 778


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = +2

Query: 680 PPPPXFXXXGXXXPPPXGGGGGGXXXXXXPPPXXXXXXXXXXPPPPXPXE 829
           PPPP     G   PPP      G      PPP          PPPP   E
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPG---EHMPPPPMHHEPGEHMPPPPMHHE 254



 Score = 29.5 bits (63), Expect = 0.69
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = +2

Query: 680 PPPPXFXXXGXXXPPPXGGGGGGXXXXXXPPPXXXXXXXXXXPPPPXPXE 829
           PPPP     G   PPP      G      PPP          PPPP   E
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPG---EHMPPPPMHHEPGEHMPPPPMHHE 293



 Score = 29.5 bits (63), Expect = 0.69
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = +2

Query: 680 PPPPXFXXXGXXXPPPXGGGGGGXXXXXXPPPXXXXXXXXXXPPPPXPXE 829
           PPPP     G   PPP      G      PPP          PPPP   E
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPG---EHMPPPPMHHEPGEHMPPPPMHHE 332



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 20/71 (28%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
 Frame = +1

Query: 610 PPPXGG--GGXXXXPPXXXXXXXXXXPPPXLXXXGXXXPXPPXGGGGGGXXXXXXPPXXX 783
           PPP     G     PP          PPP     G   P PP     G       PP   
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG---EHMPPPPMH 291

Query: 784 XXXXXXXPPPP 816
                  PPPP
Sbjct: 292 HEPGEHMPPPP 302



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 20/71 (28%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
 Frame = +1

Query: 610 PPPXGG--GGXXXXPPXXXXXXXXXXPPPXLXXXGXXXPXPPXGGGGGGXXXXXXPPXXX 783
           PPP     G     PP          PPP     G   P PP     G       PP   
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG---EHMPPPPMH 330

Query: 784 XXXXXXXPPPP 816
                  PPPP
Sbjct: 331 HEPGEHMPPPP 341


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -2

Query: 478 RGXFFGGXXKXGGGXNKXXRXHXGGGGGXKXPXGGVRG 365
           RG F GG    GGG         GG  G +   GG RG
Sbjct: 18  RGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARG 55


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 768 PPPXXXXXXXXXXPPPPPXXKKXKKKK 848
           PPP          PPPPP   K +K K
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 671 PXXPPPPXFXXXGXXXPPPXGG 736
           P  PPPP F       PPP  G
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPG 31



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 768 PPPXXXXXXXXXXPPPPPXXKKXKKKK 848
           PPP          PPPPP     KK+K
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 767 PPPXXXXXXXXXXPPPPXPXEKXKKKKK 850
           PPP          PPPP P    K+K K
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKKRKNK 39


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/48 (31%), Positives = 15/48 (31%)
 Frame = +3

Query: 672 PXXPPPPXFXXGGGXXXPPXGGGGGGXXXXXXPPPXXXXXXXXXXPPP 815
           P  PPPP     G    PP G           PPP          PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSA------PPPPPPRSAPSTGRQPPP 378



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/48 (31%), Positives = 15/48 (31%)
 Frame = +3

Query: 672 PXXPPPPXFXXGGGXXXPPXGGGGGGXXXXXXPPPXXXXXXXXXXPPP 815
           P  PPPP     G    PP G G         PPP           PP
Sbjct: 311 PPPPPPPSRRNRG---KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = -2

Query: 514 PXGGGAPPXX*XRGXFFGGXXKXGGGXNKXXRXHXGGGGGXKXPXGGVRGF 362
           P G G        G   GG    GGG         G GGG     GG+ GF
Sbjct: 204 PGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,712
Number of Sequences: 5004
Number of extensions: 43037
Number of successful extensions: 306
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)