Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_C17
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and I...   132   6e-32
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    29   0.86 

>SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and III
           subunit Rpb6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score =  132 bits (319), Expect = 6e-32
 Identities = 62/84 (73%), Positives = 71/84 (84%)
 Frame = +2

Query: 344 QAGGGVDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKHG 523
           Q+G  V K  R TT YMTKYERAR+LGTRALQI+M APV+V+LEGETDPLQIAMKEL   
Sbjct: 59  QSGKAVAKEDRTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQK 118

Query: 524 KIPIIIRRYLPDHSYEDWSIDELI 595
           KIP+++RRYLPD SYEDWS+ ELI
Sbjct: 119 KIPLLVRRYLPDGSYEDWSVAELI 142


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 513 NSFMAICNGSVSPSSSTMTGAHIAICKALVPKTLARSYLVMYRVVIRLD 367
           +SF  + +   SPSSS +   +I +C   +P+ L  S L    +V+ LD
Sbjct: 263 SSFTIVNDPLKSPSSSRLRIRNITLCADKIPRPLLNSKLPRKTLVLDLD 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,521
Number of Sequences: 5004
Number of extensions: 44582
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)