Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_C17
(871 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27113-1|CAA81629.1| 127|Homo sapiens RNA Polymerase II subunit... 145 2e-34
CR457021-1|CAG33302.1| 127|Homo sapiens POLR2F protein. 145 2e-34
CR456546-1|CAG30432.1| 127|Homo sapiens POLR2F protein. 145 2e-34
BC003582-1|AAH03582.1| 127|Homo sapiens polymerase (RNA) II (DN... 145 2e-34
AL031587-2|CAB62981.1| 127|Homo sapiens polymerase (RNA) II (DN... 145 2e-34
BC016851-1|AAH16851.1| 238|Homo sapiens cell death-inducing DFF... 31 4.1
AY364638-1|AAR23106.1| 133|Homo sapiens cell death activator CI... 31 4.1
AF303893-1|AAN32612.1| 238|Homo sapiens cell death activator CI... 31 4.1
BC131799-1|AAI31800.1| 447|Homo sapiens 5-hydroxytryptamine (se... 30 9.5
AF459285-1|AAL66182.1| 447|Homo sapiens 5-hydroxytryptamine rec... 30 9.5
>Z27113-1|CAA81629.1| 127|Homo sapiens RNA Polymerase II subunit
14.4 kD protein.
Length = 127
Score = 145 bits (352), Expect = 2e-34
Identities = 74/95 (77%), Positives = 77/95 (81%)
Frame = +2
Query: 320 NVQCLALGQAGGGVDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQI 499
NV+ L G+ KRITT YMTKYERARVLGTRALQIAMCAPVMVELEGETDPL I
Sbjct: 35 NVEILPSGERPQA--NQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLI 92
Query: 500 AMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 604
AMKELK KIPIIIRRYLPD SYEDW +DELII D
Sbjct: 93 AMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>CR457021-1|CAG33302.1| 127|Homo sapiens POLR2F protein.
Length = 127
Score = 145 bits (352), Expect = 2e-34
Identities = 74/95 (77%), Positives = 77/95 (81%)
Frame = +2
Query: 320 NVQCLALGQAGGGVDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQI 499
NV+ L G+ KRITT YMTKYERARVLGTRALQIAMCAPVMVELEGETDPL I
Sbjct: 35 NVEILPSGERPQA--NQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLI 92
Query: 500 AMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 604
AMKELK KIPIIIRRYLPD SYEDW +DELII D
Sbjct: 93 AMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>CR456546-1|CAG30432.1| 127|Homo sapiens POLR2F protein.
Length = 127
Score = 145 bits (352), Expect = 2e-34
Identities = 74/95 (77%), Positives = 77/95 (81%)
Frame = +2
Query: 320 NVQCLALGQAGGGVDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQI 499
NV+ L G+ KRITT YMTKYERARVLGTRALQIAMCAPVMVELEGETDPL I
Sbjct: 35 NVEILPSGERPQA--NQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLI 92
Query: 500 AMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 604
AMKELK KIPIIIRRYLPD SYEDW +DELII D
Sbjct: 93 AMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>BC003582-1|AAH03582.1| 127|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide F protein.
Length = 127
Score = 145 bits (352), Expect = 2e-34
Identities = 74/95 (77%), Positives = 77/95 (81%)
Frame = +2
Query: 320 NVQCLALGQAGGGVDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQI 499
NV+ L G+ KRITT YMTKYERARVLGTRALQIAMCAPVMVELEGETDPL I
Sbjct: 35 NVEILPSGERPQA--NQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLI 92
Query: 500 AMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 604
AMKELK KIPIIIRRYLPD SYEDW +DELII D
Sbjct: 93 AMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>AL031587-2|CAB62981.1| 127|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide F protein.
Length = 127
Score = 145 bits (352), Expect = 2e-34
Identities = 74/95 (77%), Positives = 77/95 (81%)
Frame = +2
Query: 320 NVQCLALGQAGGGVDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQI 499
NV+ L G+ KRITT YMTKYERARVLGTRALQIAMCAPVMVELEGETDPL I
Sbjct: 35 NVEILPSGERPQA--NQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLI 92
Query: 500 AMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 604
AMKELK KIPIIIRRYLPD SYEDW +DELII D
Sbjct: 93 AMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
>BC016851-1|AAH16851.1| 238|Homo sapiens cell death-inducing
DFFA-like effector c protein.
Length = 238
Score = 31.5 bits (68), Expect = 4.1
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 429 LVPKTLARSYLVMYRVVIRLDLSTPPPACPKARHC 325
L PK+L+R V VV + LS P P P+AR C
Sbjct: 11 LYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPC 45
>AY364638-1|AAR23106.1| 133|Homo sapiens cell death activator
CIDE-3 beta protein.
Length = 133
Score = 31.5 bits (68), Expect = 4.1
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 429 LVPKTLARSYLVMYRVVIRLDLSTPPPACPKARHC 325
L PK+L+R V VV + LS P P P+AR C
Sbjct: 11 LYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPC 45
>AF303893-1|AAN32612.1| 238|Homo sapiens cell death activator
CIDE-3 protein.
Length = 238
Score = 31.5 bits (68), Expect = 4.1
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 429 LVPKTLARSYLVMYRVVIRLDLSTPPPACPKARHC 325
L PK+L+R V VV + LS P P P+AR C
Sbjct: 11 LYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPC 45
>BC131799-1|AAI31800.1| 447|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 3, family member C protein.
Length = 447
Score = 30.3 bits (65), Expect = 9.5
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = -2
Query: 516 FNSFMAICNGSVSPSSSTMTGAHIAICKALVPKTLARSYLVMYRVVIRLDLSTPPPACPK 337
+N F+ + N + S + + + A+C +L+ +L + + Y + + +T PP P+
Sbjct: 289 YNVFLLMMNDLLPASGTPLISVYFALCLSLMVVSLLETVFITYLLHV---ATTQPPPMPR 345
Query: 336 ARHCTL 319
H L
Sbjct: 346 WLHSLL 351
>AF459285-1|AAL66182.1| 447|Homo sapiens 5-hydroxytryptamine
receptor 3 subunit C protein.
Length = 447
Score = 30.3 bits (65), Expect = 9.5
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = -2
Query: 516 FNSFMAICNGSVSPSSSTMTGAHIAICKALVPKTLARSYLVMYRVVIRLDLSTPPPACPK 337
+N F+ + N + S + + + A+C +L+ +L + + Y + + +T PP P+
Sbjct: 289 YNVFLLMMNDLLPASGTPLISVYFALCLSLMVVSLLETVFITYLLHV---ATTQPPPMPR 345
Query: 336 ARHCTL 319
H L
Sbjct: 346 WLHSLL 351
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,388,864
Number of Sequences: 237096
Number of extensions: 1380763
Number of successful extensions: 6162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6162
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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