Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_C15
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 34 0.023
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,... 31 0.16
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 29 0.88
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 28 1.5
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 28 1.5
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 28 2.0
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 3.5
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 27 3.5
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 4.7
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 6.2
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 6.2
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 26 8.2
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c... 26 8.2
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 34.3 bits (75), Expect = 0.023
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 429 NTKTPIPSEDGKQSEFECPVCSKIFKVYSWAWKHIQKYH 545
N KT +P G +S F CP CSK FK +HI+ H
Sbjct: 409 NRKTSVPRSPGGKS-FVCPECSKKFKRSEHLRRHIRSLH 446
>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 546
Score = 31.5 bits (68), Expect = 0.16
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 512 LLGLETHPEISLH*REREPCFTNIERYNQASSY 610
L +E HP++S+H + PC T I R++Q S+
Sbjct: 373 LYEIENHPQVSVH-MDVYPCMTGITRFSQLPSW 404
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 29.1 bits (62), Expect = 0.88
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +3
Query: 273 KKRIAYRPKTEVIAKRKLIPHKKVIKVAHKMNKTSENASTKKSQPHNLLRKYNTKTPIPS 452
KKR+ R K ++++ + H ++ V K E+ K+ + + N +
Sbjct: 317 KKRVWSREK-RLLSEMAITNHSPLLNV-DDYRKFREDLWKKRHGKRKVYQCSNCSQTFIN 374
Query: 453 EDGKQSEFECPVCSKIFKVYSWAW 524
ED + S CP C + K++S W
Sbjct: 375 EDIQNSSAFCPKCIRHSKLFSLPW 398
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 597 KPVRIERCIACNVLIKSDDHTC 662
KP R + C CN+ ++ DH C
Sbjct: 167 KPARSKHCRLCNICVEKFDHHC 188
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +3
Query: 291 RPKTEVIAKR--KLIP-HKKVIKVAHKMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDG 461
RP +E+I R P H+ + N N S + SQ HNL P S
Sbjct: 208 RPPSELINSRISDFFPDHQPKLLEKTISNSLRRNLSIRTSQGHNLGNFGQEILPRSSRRA 267
Query: 462 KQSEFECPVCS 494
+ SE CP+ S
Sbjct: 268 RPSELVCPLSS 278
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 360 KMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDG 461
++NK EN T+ NLL+K+ T +P PS +G
Sbjct: 169 EINKIPENIVTQSLSYTNLLKKFET-SPNPSNNG 201
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 357 HKMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDGKQSEFECPVCSK-IFKVYSWAWKHI 533
+K ++ S N+ KK P +TKT + + + ECP+C++ + + ++ H
Sbjct: 51 YKKSRISSNSENKKQIP-------DTKTLLETFQKIKKTLECPICTEALQRPFTTHCGHT 103
Query: 534 QKYHCI 551
Y C+
Sbjct: 104 YCYECL 109
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 763 FTVKELKNLFFPDEXAFSAWRQDPEKRCD 849
F+ E+ +FF + F WR++ +KR D
Sbjct: 379 FSNDEVVRVFFTEPNVFKNWRRENQKRID 407
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 340 FLWGISFLLAITSVLGRYAILFFSGWATAWCERNA 236
FL + AI +LG +F SG+ T WC +NA
Sbjct: 388 FLTYLDLRQAIGLILGVLHTVF-SGYTTVWCPQNA 421
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 49 VGNLWNVFNDCSRRLNSEEKYTFMT*LKRMLNIKWVQRYQES 174
+G++WNVF C+ L + +R+ NI W Y+E+
Sbjct: 30 LGSMWNVFTKCAENLENG---------RRLENISWRLWYREA 62
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 532 MCFQAQE*TLNILEQTGHSNSDCFPSSLGIGVLVLYFLNKLCG 404
+CF A++ T++ TG N + +G+ +F+ K CG
Sbjct: 1939 ICFNARQNTVSSRRLTGECNKHAATCTGSVGI---FFITKACG 1978
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 369 KTSENASTKKS--QPHNLLRKYNTKTPIPSEDGKQSEFECPVCSKI 500
K S+ AS+ +S PH +L + PS+ + + EC CSKI
Sbjct: 115 KESQLASSAESIYNPH-ILNTFCLGKTAPSDKNRYTTTECLACSKI 159
>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
2|||Manual
Length = 221
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 60 MERFQRLFASLEQ*RKIHFYDLIETNAEHKMGSKIPGKLRSQRL 191
+ + ++F+S+ + ++ DL+ T +G +PG + S RL
Sbjct: 157 LNKIPKIFSSITEAMSLNPGDLVLTGTPKGVGPVVPGDILSARL 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,728,380
Number of Sequences: 5004
Number of extensions: 84022
Number of successful extensions: 251
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -