Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_C15
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115...    34   0.17 
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994...    33   0.40 
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087...    33   0.40 
08_02_1114 - 24388807-24388932,24390941-24390970,24391044-243911...    31   1.2  
03_05_0711 + 27051991-27052368,27053032-27053265,27055429-270556...    30   2.8  
06_03_1478 - 30420097-30420651                                         29   3.7  
02_05_0202 + 26708049-26709074                                         29   3.7  
04_04_0734 + 27648661-27649596                                         29   4.9  
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90...    29   4.9  
09_02_0366 + 7941550-7942161,7942230-7942775                           29   6.5  
08_02_1172 + 24898290-24899141,24900864-24901328                       29   6.5  
07_03_0476 - 18547223-18548187,18548743-18549958                       29   6.5  
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    29   6.5  
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973...    28   8.6  
09_04_0564 + 18565583-18566449,18569662-18570123                       28   8.6  
06_03_1230 + 28575661-28575728,28575791-28575861,28575978-285761...    28   8.6  
05_04_0019 + 17197271-17197445,17197937-17198067,17198129-171981...    28   8.6  
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193...    28   8.6  

>08_02_1060 +
           24007980-24008662,24010078-24010219,24010293-24011537,
           24012453-24013040
          Length = 885

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +3

Query: 459 GKQSEFECPVCSKIFKVYSWAWKHI---QKYH 545
           GK  +FECPVC+K F+  S  + H+    KYH
Sbjct: 362 GKDGKFECPVCNKTFEEQSRYFGHVGSHAKYH 393


>08_02_1057 +
           23995782-23996446,23998026-23998167,23998242-23999486,
           23999521-23999529
          Length = 686

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 459 GKQSEFECPVCSKIFKVYSWAWKHI 533
           GK  +FECPVC+K F+  S  + HI
Sbjct: 356 GKDGKFECPVCNKTFEEQSRYFGHI 380


>04_04_1229 -
           31906854-31907300,31907986-31908181,31908631-31908756,
           31909962-31910329,31910680-31910835,31910968-31911168,
           31911230-31911375,31911439-31911865,31912527-31912627,
           31913197-31913254
          Length = 741

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 705 LGCNQQFNTLHLYELHIAG 761
           LGCN    +LHLYE+HI+G
Sbjct: 198 LGCNISLTSLHLYEVHISG 216


>08_02_1114 -
           24388807-24388932,24390941-24390970,24391044-24391100,
           24391231-24391393,24391487-24391614,24391697-24391802,
           24391912-24391991,24392118-24392215,24392491-24392631,
           24392738-24392822,24393556-24393693
          Length = 383

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/63 (23%), Positives = 26/63 (41%)
 Frame = +3

Query: 303 EVIAKRKLIPHKKVIKVAHKMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDGKQSEFEC 482
           +++ KR+  PH+ V+    +  +     ST K            KT  P +D    +  C
Sbjct: 256 QLLGKRRGFPHRTVLPPPVRDFQQYYGCSTVKETQSTSYGSLQKKTSAPKQDSDIGDQTC 315

Query: 483 PVC 491
           P+C
Sbjct: 316 PIC 318


>03_05_0711 +
           27051991-27052368,27053032-27053265,27055429-27055687,
           27055956-27056149
          Length = 354

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 427 YFLNKLCGCDFFVEAFSDVLFILWATFITFLWG 329
           Y++N + G  +  + FSDVL   + TFI  L+G
Sbjct: 176 YYVNPMLGATYTPDQFSDVLMQPFTTFIEGLYG 208


>06_03_1478 - 30420097-30420651
          Length = 184

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 201 CDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVIAK 317
           CD C   F+  QAL  H+A +H  KK  ++  K   +AK
Sbjct: 110 CDRCKAPFETRQALGGHRA-SHSTKKGCSWHAKQLAMAK 147


>02_05_0202 + 26708049-26709074
          Length = 341

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 441 PIPSEDGKQSEFECPVCSKIFKVY 512
           P+P    K++ F+CP C K+F+ Y
Sbjct: 190 PVPE---KRTRFQCPACKKVFRSY 210


>04_04_0734 + 27648661-27649596
          Length = 311

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 441 PIPSEDGKQSEFECPVCSKIFKVY 512
           P  +   K++ F+CP C K+F+ Y
Sbjct: 163 PAAAAAQKRTRFQCPACKKVFRSY 186


>04_01_0083 +
           904473-905167,905247-905347,905902-905994,907322-907968
          Length = 511

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 186 RLTCKCDTCALGFKNVQALRSHQAVAHPLK 275
           R  C C  C   F    +L  HQA+ H +K
Sbjct: 238 RELCACSQCGEVFNKADSLEHHQAIRHAVK 267


>09_02_0366 + 7941550-7942161,7942230-7942775
          Length = 385

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 690 SQYSCLGCNQQFNTLHLYELHIAGLHSEGAEKPVLS**GCV-LGVATGPGETLR 848
           +Q+SC  CN+ FN  +  ++H+ G H     K   S  G + +G A  P   +R
Sbjct: 186 TQFSCAVCNKTFNRFNNMQMHMWG-HGSQYRKGSESLRGAITVGGAAPPASLMR 238


>08_02_1172 + 24898290-24899141,24900864-24901328
          Length = 438

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
 Frame = +3

Query: 399 SQPHNLLRKYNTKTPIPSEDG-KQSEFECPVCSKIFKVYS----WAWKHIQKYHCIDEKG 563
           S P   L K     P PS+     ++F CPVC K F  Y+      W H  +Y    E  
Sbjct: 242 STPIGKLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESL 301

Query: 564 NPVLPTS 584
             V PT+
Sbjct: 302 RGVQPTA 308


>07_03_0476 - 18547223-18548187,18548743-18549958
          Length = 726

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 856 ILYRSVSPGPVATPRTXPHQERTGFSAPSL*SPAMCSSYK 737
           I+  + S GP  TPR  P   RTG  A  +     C +Y+
Sbjct: 321 IVSNNASTGPSGTPRPGPPPTRTGCQARMVIKITPCRTYR 360


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 336 KKVIKVAHKMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDGKQS 470
           KKV+     + K+  N  +KK+ P N   + N   P P+++ K S
Sbjct: 171 KKVVSGQKNVGKSDANVDSKKAAPENKAPE-NKANPTPAKNNKPS 214


>11_06_0047 +
           19595904-19596185,19596284-19596424,19597195-19597307,
           19597970-19598049,19598557-19598720,19598931-19599060,
           19599155-19599254,19599452-19599500,19599775-19599849,
           19600026-19600124,19600745-19600823,19600897-19601045,
           19601334-19601393,19601490-19601684
          Length = 571

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 576 PTSKDIIKPVRIERCIACNVLIKSDDHTC 662
           PT K II+P+R + C  C   ++  DH C
Sbjct: 375 PTCK-IIRPMRSKHCPTCKHCVEQFDHHC 402


>09_04_0564 + 18565583-18566449,18569662-18570123
          Length = 442

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
 Frame = +3

Query: 399 SQPHNLLRKYNTKTPIPSEDG-KQSEFECPVCSKIFKVYS----WAWKHIQKYHCIDEKG 563
           S P   L K     P PS+     ++F CPVC K F  Y+      W H  +Y    E  
Sbjct: 247 STPIGRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESL 306

Query: 564 NPVLPTS 584
             + PT+
Sbjct: 307 RGIQPTA 313


>06_03_1230 +
           28575661-28575728,28575791-28575861,28575978-28576188,
           28576339-28576495
          Length = 168

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
 Frame = +3

Query: 219 GFKNVQALRSHQAVAH----PLKKRIAYRPKTEVIAKRKLIPHKKVIKVAHKMNKTSENA 386
           GF     L+ H  VA     PL    +Y+    V  + K    +  +K    MNKT EN 
Sbjct: 91  GFSYEDRLKPHIPVATDRVLPLSLASSYKGMRLVTLQSKEKAAR--LKSLRAMNKTVENM 148

Query: 387 STKKSQPHNLLRKYNTKTP 443
            TK    +N++RK     P
Sbjct: 149 RTKIGMKNNVIRKLPKNCP 167


>05_04_0019 +
           17197271-17197445,17197937-17198067,17198129-17198164,
           17198196-17198333,17198503-17198601,17198750-17199124
          Length = 317

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 201 CDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVIAKRKLIPHKKVIKVAHK 362
           C   ALG   +  + S +   HPL   +  + + E+I K K++P K VI  A K
Sbjct: 101 CKGLALGSNLMAYMISEKVKPHPLVVTLLTQVE-EIIPKWKIVPTKDVIDSAFK 153


>01_06_0873 +
           32617428-32617532,32618166-32618234,32619195-32619380,
           32619687-32619776,32620389-32620462,32621149-32621260,
           32621413-32621468,32621826-32621880,32621965-32622021,
           32622696-32622797,32623467-32623547,32623756-32623808,
           32625245-32625314,32626540-32626603,32627339-32627487,
           32627564-32627719,32628011-32628108,32628763-32628847,
           32628932-32628997,32629066-32629125,32629408-32629494,
           32630307-32630360,32630538-32630576,32630651-32630779,
           32630859-32630911,32630984-32631032,32632240-32632298,
           32633111-32633259,32633338-32633492,32633719-32633847,
           32633932-32634017,32634220-32634335,32634429-32634541,
           32635335-32635458,32635540-32635658,32636289-32636490,
           32636586-32636757,32637852-32638176,32638442-32638529,
           32638970-32639059,32639169-32639370,32639681-32639705
          Length = 1450

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
 Frame = +3

Query: 165 PGKLRSQRLTCKCDTCALGFKNVQALRSHQAVAHPLKKRI--AYRPKTEVIA--KRKL-I 329
           PG  + + L  + D+  L  KNVQALR+   VAH L   +  ++    E +A   R +  
Sbjct: 531 PGSKKVEMLVDQRDSIILTPKNVQALRTLFNVAHRLHNVLGPSWVLVLETLAALDRAIHS 590

Query: 330 PHKKVIKVAHKMNKTSENASTKKSQPHNL 416
           PH    +V+  +++ S + S + S  H L
Sbjct: 591 PHASTQEVSASVSRLSRDTSGQYSDFHIL 619


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,616,098
Number of Sequences: 37544
Number of extensions: 481174
Number of successful extensions: 1289
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)