Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_C12
         (986 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    33   0.062
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    31   0.25 
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    26   9.4  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 33.1 bits (72), Expect = 0.062
 Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
 Frame = +2

Query: 332 SVDKEELVQRAKLXXXXXXXXXXXXXXKEVTETGVELSXEERNLLSVCL*XMS*VPDGHH 511
           +  +E+ V  AKL              K V  T  EL+ EERNLLSV    +        
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62

Query: 512 GVSXPQIEQQXRGFRKKTAXGKRI*GYSRNGAQR--NSCYXVLGLLDKHLNSLXASXSTT 685
            +    IEQ+    +  TA  + I  Y +   Q     C  +L +L+KHL    AS  + 
Sbjct: 63  RI-VSSIEQKEES-KGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESK 120

Query: 686 V 688
           V
Sbjct: 121 V 121


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 34/111 (30%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
 Frame = +2

Query: 329 MSVDKEELVQRAKLXXXXXXXXXXXXXXKEVTETGVELSXEERNLLSVCL*XMS*VPDGH 508
           MS  +E  V  AKL              K+V  +  +LS EERNLLSV    +       
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60

Query: 509 HGVSXPQIEQQXRGFRKKTAXGKRI*GYSRNGAQRNS--CYXVLGLLDKHL 655
             +    IEQ+    R  T     I  Y +      S  C+ VL +L+KHL
Sbjct: 61  WRI-ISSIEQKEES-RGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHL 109



 Score = 30.3 bits (65), Expect = 0.44
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 469 SLLIXNVVGARRSSWRVIXS 528
           S+   N++GARR+SWR+I S
Sbjct: 47  SVAYKNIIGARRASWRIISS 66


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 234 EKLIXCLNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNW 371
           EKL+ C       HF    +G+ +  L    RC +T    CNVP W
Sbjct: 683 EKLVACTT-----HFY---EGVRKSALSSLWRCATTYYKVCNVPQW 720


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,815
Number of Sequences: 5004
Number of extensions: 41842
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)