Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_C09
(1073 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 94 3e-20
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 60 5e-10
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 56 9e-09
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 53 8e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 51 3e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 50 7e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 48 2e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 46 7e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 46 7e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 46 1e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 45 2e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 44 3e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 44 5e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 42 2e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 41 3e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 41 3e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 39 0.001
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 39 0.001
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 38 0.002
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 38 0.002
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 38 0.002
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.007
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 36 0.010
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.017
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 0.022
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 32 0.12
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 32 0.12
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.12
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 32 0.12
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.37
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 1.5
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 28 2.6
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 3.4
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 4.5
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 7.9
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 7.9
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 94.3 bits (224), Expect = 3e-20
Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Frame = +1
Query: 169 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELRD 345
+ +N D +NQ + +G +S + N+ E +P +D K+F+GGL+WETTD LRD
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 346 HFGAYGEIESINVKTDPNTGRSRGFAFIVFXAPESIDKVMAAGEHTINXKKVDPXNAXAR 525
+F +GE+ V D TGRSRGF F+ F P+ +++VM+ EH ++ K +DP A R
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPR 240
Score = 55.2 bits (127), Expect = 1e-08
Identities = 24/75 (32%), Positives = 42/75 (56%)
Frame = +1
Query: 292 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAPESIDKVMAA 471
K+FVGG+ + T++E R+ F +G + + D +TGR RGF F+ + +++ M+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 472 GEHTINXKKVDPXNA 516
TI+ K V+ A
Sbjct: 308 PYITIHGKPVEVKRA 322
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 60.1 bits (139), Expect = 5e-10
Identities = 28/97 (28%), Positives = 50/97 (51%)
Frame = +1
Query: 193 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIE 372
I ++ +G S ++ ++ LFVG L +ETTD +L++HFG G+I
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIR 255
Query: 373 SINVKTDPNTGRSRGFAFIVFXAPESIDKVMAAGEHT 483
+ + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 256 RVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 56.0 bits (129), Expect = 9e-09
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAPESIDKVMAAG 474
+FVG LS+ T+ +L FG G+I+SI + TDP +GR +GF ++ F +S K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 475 EHTI 486
H I
Sbjct: 428 GHFI 431
Score = 50.8 bits (116), Expect = 3e-07
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +1
Query: 271 PGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAP 444
P +D + +FVG LSW D+ L F YG I V D +GRS+G+ ++ F P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 445 ESIDKVMAA-GEHTINXKKVD 504
E+ +AA G I+ + V+
Sbjct: 315 EAAKAAVAANGTKEIDGRMVN 335
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 52.8 bits (121), Expect = 8e-08
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Frame = +1
Query: 259 SAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 432
S G+++DRK LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 433 FXAPES--IDKVMAAGEHTI 486
F P++ I K + HTI
Sbjct: 140 FINPKTDVISKALKF-HHTI 158
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 50.8 bits (116), Expect = 3e-07
Identities = 23/67 (34%), Positives = 37/67 (55%)
Frame = +1
Query: 277 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAPESID 456
+D R +FVG L++E ++ L +FG G I+ + + DP T +GFA+I F +D
Sbjct: 266 QDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVD 325
Query: 457 KVMAAGE 477
K + E
Sbjct: 326 KALLLNE 332
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 49.6 bits (113), Expect = 7e-07
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +1
Query: 277 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 435
RDD L V LS +T ++ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 48.0 bits (109), Expect = 2e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +1
Query: 283 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAPESIDKV 462
D + ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P +
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 463 M 465
+
Sbjct: 113 L 113
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 46.4 bits (105), Expect = 7e-06
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +1
Query: 220 NAENGGGDSQDHNSAEAPGRDDDR---KLFVGGLSWETTDKELRDHFGAYGEIESINVKT 390
+ E+ G S D NS RD++ +FV L +E T++EL +HF +G + +
Sbjct: 251 DVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVK 310
Query: 391 DPNTGRSRGFAFIVF 435
DP T RS G FI F
Sbjct: 311 DPATDRSLGRGFIKF 325
Score = 41.5 bits (93), Expect = 2e-04
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAPESIDK 459
LFV L+++T +L + F G I+ V T+P TG +RG+ F+ F E +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 46.4 bits (105), Expect = 7e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAPESIDKVM 465
LF+ L E D+ L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
Score = 36.7 bits (81), Expect = 0.006
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAPESIDKVMAAG 474
L+VG L T+ L + F + G + SI V D T RS G+A++ F E +K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 475 EHTI 486
+T+
Sbjct: 142 NYTL 145
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 45.6 bits (103), Expect = 1e-05
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +1
Query: 280 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 435
D + +F+ LS++T + ++ F YG IE I V + TG+S G+AF+VF
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVF 148
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 45.2 bits (102), Expect = 2e-05
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +1
Query: 202 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESIN 381
+++++ N E+ D ++ SA + LFV G++ + EL+ F +G + +
Sbjct: 72 EDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131
Query: 382 VKTDPNTGRSRGFAFIVFXAPE 447
+ +P T SRGF F+ F E
Sbjct: 132 IMREPVTKASRGFGFLSFSTVE 153
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.4 bits (100), Expect = 3e-05
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 226 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 405
E G G ++ P + VG LS++ T+ +L D FG + SI + DP T
Sbjct: 74 EGGMGSGYQRDAIPIPS-EPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTE 130
Query: 406 RSRGFAFIVFXAPESIDKVMA-AGE 477
RSRGF ++ F +++ +A +GE
Sbjct: 131 RSRGFGYVEFETADTLSAALALSGE 155
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 43.6 bits (98), Expect = 5e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +1
Query: 250 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 429
D+N + G + ++FV +S T ++LR HF ++GE+ +++K +P TG S G I
Sbjct: 82 DYNE-NSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCI 140
Query: 430 VFXAPESI 453
F SI
Sbjct: 141 SFDKRSSI 148
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +1
Query: 283 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAPESIDKV 462
D +++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ + E
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY---EDQRST 85
Query: 463 MAAGEHTINXKKVD 504
+ A ++ N K +D
Sbjct: 86 VLAVDNMTNVKLLD 99
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +1
Query: 283 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAPESIDKV 462
D R +FV L+ T +EL D F G + + D +GRS+G A++ F +S+
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Query: 463 MA 468
+A
Sbjct: 298 IA 299
Score = 35.5 bits (78), Expect = 0.013
Identities = 16/53 (30%), Positives = 33/53 (62%)
Frame = +1
Query: 292 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAPES 450
+L V + + TD++++ F +G+IE ++++ D + RS+GF +I + P S
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 40.7 bits (91), Expect = 3e-04
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----XAPESIDKV 462
++VG L W T+D+ L D F G + + +P TGRS+GF + F A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.1 bits (87), Expect = 0.001
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAPESIDK 459
LFV L+ T D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 38.7 bits (86), Expect = 0.001
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Frame = +1
Query: 241 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGR 408
D+ H SAE P + DD ++FVG LS T E+R F G + + +
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRG 83
Query: 409 SR----GFAFIVFXAPESIDKVMAAGEHTINXKKVD 504
+R G AF+ F E +DK + T+N K +D
Sbjct: 84 TRLVPSGIAFVTFNNQEDVDKAI----ETLNGKTLD 115
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 435
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V+
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVY 57
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 38.3 bits (85), Expect = 0.002
Identities = 13/52 (25%), Positives = 30/52 (57%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAPES 450
+FVG + ++ +++++ + F G +++ + DP TG +G+ F F E+
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET 60
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 38.3 bits (85), Expect = 0.002
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGE-IESINVKTDPNTGRSRGFAFIVFXAPESID-KVMA 468
LFVG L ++ L D F A G+ +++ V D N GRS+G+ F+ + + E+ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Query: 469 AGEHTINXKKVDPXNAXARHGK 534
+ K + A R GK
Sbjct: 160 MNNQFLMNKPITVSYAFKREGK 181
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 36.3 bits (80), Expect = 0.007
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAP 444
++VG + +E ++++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 35.9 bits (79), Expect = 0.010
Identities = 14/63 (22%), Positives = 35/63 (55%)
Frame = +1
Query: 283 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAPESIDKV 462
+ R+L+V + ++ +K++ F YG++ES+ + N + +GF ++V + +
Sbjct: 755 EGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENA 812
Query: 463 MAA 471
++A
Sbjct: 813 LSA 815
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.1 bits (77), Expect = 0.017
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +1
Query: 250 DHNSAEAPGR--DDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 378
+++ PG+ D+ ++VG + +D+E+ HF YG++ESI
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
Score = 33.5 bits (73), Expect = 0.052
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 241 DSQDHNSAEAPGRD-DDRKLFVGGLSWE--TTDKELRDHFGAYGEIESINVKTDPNTGRS 411
DS +S P D L+V L T +L D F +G I S + PN+G S
Sbjct: 365 DSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGIS 424
Query: 412 RGFAFIVFXAPES 450
+G+ F+ F E+
Sbjct: 425 KGYGFVAFRQIEA 437
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.7 bits (76), Expect = 0.022
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVF 435
+FVG LS + ++ F + Y +S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 405
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 32.3 bits (70), Expect = 0.12
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI-VFXAPESIDKV 462
++VG LS+ TT++++ F GEI I + D T GF F+ F +++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSL 90
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 32.3 bits (70), Expect = 0.12
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 283 DDRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFXAP 444
++ K+ V L + T+ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.3 bits (70), Expect = 0.12
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 289 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 399
R +F+G L +KE+ + FG +G+IE I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.3 bits (70), Expect = 0.12
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 286 DRKLFVGGLSWETTDKELRDHFGAYGEIESINV--KTDPNTGRSRGFAFIVFXAPE 447
+++++VGGLS +L F +G + ++ + K+ P G + FA++ F E
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.7 bits (66), Expect = 0.37
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 331 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAP 444
++L + F +G I+S + + P+T S+G+ F+ F P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 289 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 399
R +F+G L T+ E+R+ +G I+ I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 256 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 399
N A A R +++G T + L++ F +GEIE +N + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 265 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 378
E P LF+ G+ E D ++R HF YG ++S+
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSV 241
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 412 RGFAFIVFXAPESIDKVMAAGEHTINXKK 498
RGFA IVF A S ++V G H +N K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 302 TKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 189
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +1
Query: 280 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFXAPESIDK 459
D K+++ L + ++ + +G++ S + + G S+GF F F P +
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 460 VMAA--GEHTINXK 495
++ G+ T K
Sbjct: 367 AISGLDGKDTYGNK 380
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 286 DRKLFVGGLSWETTDKELRDHFGAYGEI 369
+ +LFVG + + T +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,990
Number of Sequences: 5004
Number of extensions: 52759
Number of successful extensions: 154
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 563787506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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