Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_C09
         (1073 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   2.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.7  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 187 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRK 294
           Q+    N  N NA N   D+Q+ N      ++D+R+
Sbjct: 430 QNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQ 465



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 202 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRK 294
           DN+ NGN +N  G+ Q+ N      ++D+++
Sbjct: 487 DNKQNGNRQN--GNKQNDNKQNGNRQNDNKR 515



 Score = 23.0 bits (47), Expect = 4.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 202 DNQLNGNAENGGGDSQDHNS 261
           DN+ NGN +N   ++Q+ N+
Sbjct: 512 DNKRNGNRQNDNQNNQNDNN 531



 Score = 22.2 bits (45), Expect = 8.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 205 NQLNGNAENGGGDSQDHNSAEAPGRDDDRK 294
           N  N NA+N   D+Q+ N+  A  ++ +++
Sbjct: 426 NAGNQNADNQNADNQNANNQNADNQNANKQ 455


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 476 SPAAMTLSIDSGAXNTM 426
           SPA  ++S+DSG+ NT+
Sbjct: 555 SPAIESISVDSGSINTV 571


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = -2

Query: 808 GFPXKCGXXXG-GGXLXAYXEXYQ 740
           GFP KCG   G GG    Y   Y+
Sbjct: 64  GFPIKCGTFLGSGGFGIVYKALYK 87


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +1

Query: 160 VMANNDNF-AQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 288
           + A N N  A +   +N  N N  NG  D+ + N A     + D
Sbjct: 228 ITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGD 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,680
Number of Sequences: 438
Number of extensions: 4364
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35909298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)