Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_C07
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    46   5e-06
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    28   1.5  
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.7  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   6.2  

>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +3

Query: 354 KEKTDGPFWPTLTKDKKKPHYLKIDFNKWNDEDDES*RKIIHMISSKCSRNFGGAGGPG 530
           K++    FWP LTK+K + H+L+ DF++W DED++  +  +    +    +    GG G
Sbjct: 89  KKELQEEFWPRLTKEKLRLHWLRTDFDRWVDEDEQEAQPEVSPFGAGGMPDLSALGGMG 147


>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 320 NKGXCVEXXLRKGKNRW 370
           NKG C+E  LR   NRW
Sbjct: 89  NKGECIELVLRDASNRW 105


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = +1

Query: 490 ANAPETLVELVVLGRRQKNLRLMTWKLTLMMRIYLIWNKMTLKKYSNVTFKV 645
           A  PET+  L  + R+ K  RL  WK  + + I  I N ++LK YS V  +V
Sbjct: 286 ALGPETMQSLRTIERKAKISRLGIWK-NISVSIPDI-NSLSLKDYSAVVSRV 335


>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
 Frame = -2

Query: 606 FIPDQVNSHHQSQFPS-----------HQTKVFLPSAQDHQLHQSFWSICSKSYELFFFN 460
           F  DQ  +HH S  PS              + FL + +    H SFWS+     E   F 
Sbjct: 31  FTDDQ--THHYSTLPSCDLLLIRGEVKENARCFLHNPKISHQHHSFWSLIEGCLEALQFG 88

Query: 459 FHHPHHSIC*NQFSGNA---AFSCLLLASARMDHLFFPF 352
                  +  +QF+  A    F+C+LL S R +   +PF
Sbjct: 89  LLAILQGLF-SQFAWEACSCTFACMLLTSERTEP-SYPF 125


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 482 DFEQMLQKLWWSWWSWAEGRK 544
           DFE+ L KL W  ++ A+G+K
Sbjct: 67  DFEKKLSKLAWKEYATADGKK 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,498
Number of Sequences: 5004
Number of extensions: 39006
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)