Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_C07
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0158 - 14951504-14951568,14952722-14952797,14952876-149529...    43   3e-04
03_05_0537 + 25363026-25363217,25363672-25363828,25364660-253646...    42   9e-04
08_02_0588 + 19036509-19039235                                         25   3.3  
07_01_0312 + 2214050-2214556                                           29   5.0  
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885...    28   8.7  
12_02_0299 - 17051570-17052474,17053542-17053755                       28   8.7  
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201...    28   8.7  

>03_03_0158 -
           14951504-14951568,14952722-14952797,14952876-14952943,
           14952997-14953156,14953239-14953425,14953982-14953986
          Length = 186

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +3

Query: 357 EKTDGPFWPTLTKDKKKPH-YLKIDFNKWNDEDDE 458
           +K +  +WP L K + KP  +LK+D++KW DEDDE
Sbjct: 80  KKAESKWWPRLLKKEGKPPVFLKVDWDKWQDEDDE 114


>03_05_0537 +
           25363026-25363217,25363672-25363828,25364660-25364694,
           25364803-25364848,25365277-25365311
          Length = 154

 Score = 41.5 bits (93), Expect = 9e-04
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +3

Query: 357 EKTDGPFWPTLTKDKKKPHYLKIDFNKWNDEDDES 461
           +K    +W  L K ++K  Y+K+D+NKW DED+ES
Sbjct: 82  QKEKKGWWKRLLKSEEKHPYIKVDWNKWCDEDEES 116


>08_02_0588 + 19036509-19039235
          Length = 908

 Score = 24.6 bits (51), Expect(2) = 3.3
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +2

Query: 509 WWSWWSWAE 535
           WW WW W +
Sbjct: 20  WWWWWWWGD 28



 Score = 23.4 bits (48), Expect(2) = 3.3
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 497 LQKLWWSWWSW 529
           L +++W+WW W
Sbjct: 12  LVRVFWAWWWW 22


>07_01_0312 + 2214050-2214556
          Length = 168

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 12  PXPASPTTGLLPLFAVPS--XCPAVRPFPLSCLAPFP 116
           P PA P   L P+ AVP+    PAV   P + L P P
Sbjct: 80  PMPAVPKVALPPMPAVPAVPTVPAVPAVPAASLPPMP 116


>12_02_0398 -
           18586985-18587480,18587669-18587687,18588317-18588544,
           18589699-18589966
          Length = 336

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 1/94 (1%)
 Frame = -1

Query: 298 KNSGVQCXRDRMEGXEPAHXHREKTLKPXRXGAAEXEGATTXXERKTXXXTXXPERTRRX 119
           + + +QC R+R     P H  R       R G     G      R+       P + R  
Sbjct: 17  ERTALQC-RERWWRRRPVHRGR------GRGGRRRRSGGDATGRRRGRVSGDFPAKRRAD 69

Query: 118 NGKGARQERGK-GRTAGQXEGTAKXGRRPVVGEA 20
            G+G   + G+ G  AG   G      RP  G+A
Sbjct: 70  RGRGGSCDAGRGGGAAGGCTGRDSDFTRPPPGQA 103


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +3

Query: 12  PXPASPTTGLLPLFAVPS---XCPAVRPFPLSCLAPFP 116
           P PA P   L P+F+ PS     P   PFP   L P P
Sbjct: 271 PPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQLPPLP 308


>07_03_0537 - 19218461-19218982,19219482-19219868,19219993-19220154,
            19220464-19221117,19221233-19221277,19223300-19223845,
            19223930-19224307,19224642-19225313,19225373-19225456
          Length = 1149

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = -1

Query: 301  RKNSGVQCXRDRMEGXEPAHXHREKTLKPXRXGAAEXEGATTXXERKTXXXTXXPERTRR 122
            ++ S  Q  +D  E  E     R +  +    GAA+  G      R++       +R RR
Sbjct: 1076 KERSDEQQQQDEEEEEEEEQKWRRRRRREEEDGAAKGSGGGGGAVRRSSRSCVQAKRFRR 1135

Query: 121  XNGKGAR 101
              GKG++
Sbjct: 1136 VGGKGSQ 1142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,865,088
Number of Sequences: 37544
Number of extensions: 286289
Number of successful extensions: 1058
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)