Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_C07
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical pr...    45   6e-05
Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass...    28   7.7  

>U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical
           protein ZC395.10 protein.
          Length = 175

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 357 EKTDGPFWPTLTKDKKKPHYLKIDFNKWNDEDDE 458
           +K    +WP L ++K K H+LK+DF KW DED++
Sbjct: 78  QKKTPAWWPRLLQNKGKVHWLKVDFGKWKDEDED 111


>Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical
           protein F17C8.1 protein.
          Length = 1253

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 75  AVRPFPLSCLAPFPFXRLVL 134
           +VRPFPLS +A FPF   +L
Sbjct: 794 SVRPFPLSLIAYFPFAAAIL 813


>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 278 protein.
          Length = 1130

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/83 (24%), Positives = 33/83 (39%)
 Frame = -1

Query: 316  KNTLXRKNSGVQCXRDRMEGXEPAHXHREKTLKPXRXGAAEXEGATTXXERKTXXXTXXP 137
            +N L RKN  +Q  +DR      +  H +K +     G  +        + K        
Sbjct: 967  ENALQRKNELIQQLQDRQTDESTSEPHTKKRMSITSHGVFQ----NFVSQMKDKREEASE 1022

Query: 136  ERTRRXNGKGARQERGKGRTAGQ 68
            +RTR+   K A +E+ K   A +
Sbjct: 1023 KRTRKEAEKKAEKEKEKAEKAAK 1045


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,950,128
Number of Sequences: 27780
Number of extensions: 238333
Number of successful extensions: 846
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)