Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_C06
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    29   0.66 
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    29   0.87 
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        29   1.1  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    27   2.7  

>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 746 LMYTISVNIFVRSTINKKYYKLQFPSTFIAYVL 648
           LMY   ++ ++ ST   K +   F +TFIAY L
Sbjct: 200 LMYRFDLHYYINSTSQPKKHSTYFRNTFIAYGL 232


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 385 FSHSVECFCCITLITFLTLAFCFSVHFPQLVAMVSGKAFLKSE 257
           F H +  F C+    FL   F F +HF  L     G +F+  E
Sbjct: 280 FQHFLARFFCLIFFPFLFFLFWFYMHFNILTISGPGDSFMSLE 322


>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 464 NKYLAS*KEFVEIST-VFSRRIMFLHKFFPFCGMF 363
           NK+ +S   F  +S+ +  +R+ FLH F P C  F
Sbjct: 32  NKFYSSPSTFALLSSYLIEKRLNFLHAFLPHCRSF 66


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 319 FSVHFPQLVAMVSGKAFLKSEASGVHRPLSRKQFI*AFNNLS 194
           + + FP    M   K FL   A   HR + R Q +  FN +S
Sbjct: 266 YGISFPDNKQMQEYKTFLAEAAKRDHRKIGRDQELFFFNEIS 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,285
Number of Sequences: 5004
Number of extensions: 54876
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)