Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_C05
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    28   1.5  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   3.5  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    26   8.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   8.0  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   8.0  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +2

Query: 485 IESACHDIQYPAIAKICKDNTAHFENYIHHVLKSNTSAETMCKIVGMCNNMKLDN 649
           I++AC   Q+  + +IC+DN  +    + ++LK    A+ +  ++ +C+     N
Sbjct: 729 IQAACLMNQFTEVERICRDNNVYNPEKVKNLLKEAKLADQL-PLILVCDRYDFVN 782


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 739 TKDPKYNGFSKELIFMLDGHVGAFLVQRNNIVQFHVVTHAD 617
           TK+P  +   KELI     ++GAFL++  N     V+T+ D
Sbjct: 182 TKNPSVSEAIKELIKKRQPYIGAFLLKDEN-TDTDVITNID 221


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 760 WPRMQRYASLHQPRVVKMTFP 822
           W ++  +A+LHQ  VVK T+P
Sbjct: 208 WIKVDGFANLHQVVVVKGTYP 228


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 386  PAFVSPTQSPYSVQPRRIQPP 324
            P    P QSP  VQP   QPP
Sbjct: 1031 PMAADPFQSPLYVQPTGFQPP 1051


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 49  FVEFS*LTAVT*HFDINRYAIKLEQSYLNFS 141
           FV FS LTA T H  +    + ++Q+Y++ S
Sbjct: 505 FVGFSILTAATIHMLLKFCVVNIDQNYISSS 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,573,671
Number of Sequences: 5004
Number of extensions: 76336
Number of successful extensions: 217
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)