Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_C04
(873 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 77 4e-13
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 62 1e-08
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 53 8e-06
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 51 3e-05
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 46 0.001
UniRef50_P62913 Cluster: 60S ribosomal protein L11; n=156; Eukar... 44 0.005
UniRef50_P42794 Cluster: 60S ribosomal protein L11-2; n=38; Euka... 43 0.009
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 42 0.020
UniRef50_UPI000155375A Cluster: PREDICTED: similar to ribosomal ... 41 0.047
UniRef50_Q42196 Cluster: 60S ribosomal protein L11; n=1; Arabido... 41 0.047
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 40 0.083
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 39 0.19
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 38 0.33
UniRef50_P0C0W9 Cluster: 60S ribosomal protein L11-A; n=25; Euka... 38 0.44
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 36 1.3
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur... 33 9.5
UniRef50_A7RX89 Cluster: Predicted protein; n=1; Nematostella ve... 33 9.5
UniRef50_Q9YA06 Cluster: Putative uncharacterized protein; n=1; ... 33 9.5
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 77.4 bits (182), Expect = 4e-13
Identities = 54/117 (46%), Positives = 62/117 (52%)
Frame = +3
Query: 495 VCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPXNQGITQERTCEQKASKRPGTVK 674
+C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 30 ICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE---I 77
Query: 675 RPRCWRFSIGSAPXXRASQKSTLKSEVAKPDRTIKXPGRSPXEAPSCAPLFRPXXLP 845
RPR RFSIGSAP + KS + + + K P R P APSCA LF P LP
Sbjct: 78 RPRRSRFSIGSAPLTSIA-KSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/38 (76%), Positives = 29/38 (76%)
Frame = -2
Query: 659 PFAGLLLTCSFLRYPLIXWITVLPPLSELIPLAAAERP 546
P LLTCSF YPLI WITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 53.2 bits (122), Expect = 8e-06
Identities = 30/57 (52%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 459 CINESANARGXAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPXNQGITQ 626
CI + A AR AV VL ALPL RS TRC RS GCG + R YG P QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 51.2 bits (117), Expect = 3e-05
Identities = 23/28 (82%), Positives = 23/28 (82%)
Frame = +2
Query: 713 PXTSIXKIDAQVRGGETRQDYKDXXAFP 796
P TSI KIDAQVRGGETRQDYKD FP
Sbjct: 22 PLTSITKIDAQVRGGETRQDYKDTRRFP 49
Score = 50.0 bits (114), Expect = 8e-05
Identities = 31/71 (43%), Positives = 36/71 (50%)
Frame = +3
Query: 651 SKRPGTVKRPRCWRFSIGSAPXXRASQKSTLKSEVAKPDRTIKXPGRSPXEAPSCAPLFR 830
SK+ T R RFSIGSAP + K + + + K R P EAPSCA LFR
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSIT-KIDAQVRGGETRQDYKDTRRFPLEAPSCALLFR 60
Query: 831 PXXLPDTXXXF 863
P LPDT F
Sbjct: 61 PCRLPDTCPPF 71
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 46.0 bits (104), Expect = 0.001
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +2
Query: 713 PXTSIXKIDAQVRGGETRQDYKDXXAFP 796
P TSI K DAQ+ GGETRQDYKD FP
Sbjct: 58 PLTSITKSDAQISGGETRQDYKDTRRFP 85
Score = 38.3 bits (85), Expect = 0.25
Identities = 24/55 (43%), Positives = 29/55 (52%)
Frame = +3
Query: 669 VKRPRCWRFSIGSAPXXRASQKSTLKSEVAKPDRTIKXPGRSPXEAPSCAPLFRP 833
V+ PR RFSIGSAP + KS + + + K R P APSCA LF P
Sbjct: 44 VRGPRQSRFSIGSAPLTSIT-KSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97
>UniRef50_P62913 Cluster: 60S ribosomal protein L11; n=156;
Eukaryota|Rep: 60S ribosomal protein L11 - Homo sapiens
(Human)
Length = 178
Score = 44.0 bits (99), Expect = 0.005
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = +1
Query: 46 GKVGFPHRLTKEDAMKWFQQKYDG 117
G +G HR++KE+AM+WFQQKYDG
Sbjct: 149 GCIGAKHRISKEEAMRWFQQKYDG 172
>UniRef50_P42794 Cluster: 60S ribosomal protein L11-2; n=38;
Eukaryota|Rep: 60S ribosomal protein L11-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 182
Score = 43.2 bits (97), Expect = 0.009
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +1
Query: 49 KVGFPHRLTKEDAMKWFQQKYDG 117
+VG HR+TK+DAMKWFQ KY+G
Sbjct: 149 RVGIQHRVTKDDAMKWFQVKYEG 171
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 41.9 bits (94), Expect = 0.020
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +2
Query: 578 HSKAVIRLSTXSGDNAGKNM 637
HSKAVIRLST SGDNAGKNM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_UPI000155375A Cluster: PREDICTED: similar to ribosomal
protein L11; n=1; Mus musculus|Rep: PREDICTED: similar
to ribosomal protein L11 - Mus musculus
Length = 279
Score = 40.7 bits (91), Expect = 0.047
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +1
Query: 46 GKVGFPHRLTKEDAMKWFQQKYDG 117
G +G HR++KE+AM+WFQQKY G
Sbjct: 203 GCIGAKHRISKEEAMRWFQQKYAG 226
>UniRef50_Q42196 Cluster: 60S ribosomal protein L11; n=1;
Arabidopsis thaliana|Rep: 60S ribosomal protein L11 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 64
Score = 40.7 bits (91), Expect = 0.047
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +1
Query: 58 FPHRLTKEDAMKWFQQKYDG 117
F HR+TK+DAMKWFQ KY+G
Sbjct: 27 FQHRVTKDDAMKWFQVKYEG 46
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 39.9 bits (89), Expect = 0.083
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +1
Query: 262 DPDMIRYIDEXGQTTTXMQ 318
DPDMIRYIDE GQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 38.7 bits (86), Expect = 0.19
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = -3
Query: 871 EGRKXXQVSGXXQGRNRGAHEGASXGERP 785
+G+K QVSG QGRNR AHEGA+ + P
Sbjct: 58 KGKKAEQVSGKRQGRNRRAHEGAAGEKSP 86
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 37.9 bits (84), Expect = 0.33
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = -3
Query: 529 ERGSGRAPNTQTAXPRALADSLMQ 458
+R + APNTQTA PRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_P0C0W9 Cluster: 60S ribosomal protein L11-A; n=25;
Eukaryota|Rep: 60S ribosomal protein L11-A -
Saccharomyces cerevisiae (Baker's yeast)
Length = 174
Score = 37.5 bits (83), Expect = 0.44
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 46 GKVGFPHRLTKEDAMKWFQQKYD 114
G VG H+ TKED + WF+QKYD
Sbjct: 146 GTVGNSHKTTKEDTVSWFKQKYD 168
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 35.9 bits (79), Expect = 1.3
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 457 SALMNRPTXGXRRFAYW 507
+ALMNRPT G RRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
precursor; n=2; Polaromonas|Rep: Putative
uncharacterized protein precursor - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 268
Score = 33.1 bits (72), Expect = 9.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -2
Query: 668 GSWPFAGLLLTCSFLRYP---LIXWITVLPPLSELIPLAAAERP 546
G W +G L L++ LI W+ LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201
>UniRef50_A7RX89 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 549
Score = 33.1 bits (72), Expect = 9.5
Identities = 26/83 (31%), Positives = 32/83 (38%)
Frame = +3
Query: 603 PXNQGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPXXRASQKSTLKSEVAKPDRTIKX 782
P + G + T SK GT RP SI + ST + P T K
Sbjct: 428 PESSGSLRPGTSTSSKSKS-GTTSRPESSATSIPKFSATLRPESSTTSGSDSSP--TSK- 483
Query: 783 PGRSPXEAPSCAPLFRPXXLPDT 851
PG SP P +P RP PD+
Sbjct: 484 PGSSPNSGPESSPNSRPESSPDS 506
>UniRef50_Q9YA06 Cluster: Putative uncharacterized protein; n=1;
Aeropyrum pernix|Rep: Putative uncharacterized protein -
Aeropyrum pernix
Length = 731
Score = 33.1 bits (72), Expect = 9.5
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 762 VSPPLT*ASIFXMLVXGGRSLWKNASNAAFLRFLAFCWPFAHMFFPALSPDXVD 601
++PP+ A+ F V G W+ A NA F + PF ++ PA+ VD
Sbjct: 599 ITPPVALAA-FVGAVLAGADFWRTAINATIYGFAKYILPFVFVYSPAILIVTVD 651
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 645,013,556
Number of Sequences: 1657284
Number of extensions: 9923901
Number of successful extensions: 23951
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23917
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77882636090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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