Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_C04
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...    38   0.002
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...    38   0.002
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   8.1  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 46  GKVGFPHRLTKEDAMKWFQQKYD 114
           G+VG+ H++  ED + WF+QKYD
Sbjct: 146 GRVGYTHKINAEDTINWFKQKYD 168


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 46  GKVGFPHRLTKEDAMKWFQQKYD 114
           G+VG+ H++  ED + WF+QKYD
Sbjct: 146 GRVGYTHKINAEDTINWFKQKYD 168


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -3

Query: 850 VSGXXQGRNRGAHEGASXGERPGIFIVLSGFATSDLSVDFXDARXXGAEPMEKR 689
           V    + R   AH  +S  ++P  F +   FATS  +     A   G EP E R
Sbjct: 138 VMNSTESRPSSAHVSSSYTQKPFAFPLGPVFATSSQAAASETALPSGYEPDEAR 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,616
Number of Sequences: 5004
Number of extensions: 39504
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)