Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_C03
         (898 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    25   0.61 
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    25   0.61 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    25   1.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   7.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   7.5  

>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 604 MLKTTQTLYKLLCNLPSRQRRFPHT*HIF 518
           MLK    +  +L   P++++RFPH  H +
Sbjct: 1   MLKWVLKVGNVLAMTPTKEKRFPHRIHSY 29


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 604 MLKTTQTLYKLLCNLPSRQRRFPHT*HIF 518
           MLK    +  +L   P++++RFPH  H +
Sbjct: 1   MLKWVLKVGNVLAMTPTKEKRFPHRIHSY 29


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 386 GMMYTLYKNHFNKLKGNEH 442
           G + T Y++HFN   GN H
Sbjct: 35  GPLRTSYQHHFNSPAGNAH 53


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 803 FKNLIWVLNVFSGTI 847
           F+N+  V+NVFSG +
Sbjct: 459 FQNVFAVINVFSGEL 473


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 803 FKNLIWVLNVFSGTI 847
           F+N+  V+NVFSG +
Sbjct: 459 FQNVFAVINVFSGEL 473


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,467
Number of Sequences: 336
Number of extensions: 3358
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24927353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)