Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_C02
(1083 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 40 6e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.49
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.85
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.5
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 4.6
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 23 5.9
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 39.9 bits (89), Expect = 6e-04
Identities = 21/58 (36%), Positives = 21/58 (36%)
Frame = -2
Query: 842 PXPPPXXXXXXFPPPXXXXXXPXGGGGGGXPXXTPPPPXXXXGXFXXXXPXPXPPPPP 669
P PPP PPP P G G G P PPPP G P P P P
Sbjct: 750 PVPPPAPIMGGPPPPPP----PPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/58 (36%), Positives = 21/58 (36%)
Frame = -2
Query: 842 PXPPPXXXXXXFPPPXXXXXXPXGGGGGGXPXXTPPPPXXXXGXFXXXXPXPXPPPPP 669
P PPP P P P GG P PPP G P P PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG------PPPPPPPPP 783
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 716 PPXPXGXGGXXXGXPPPPPXGGXGG 790
PP P G G PPPPP G
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = -2
Query: 740 PPPPXXXXGXFXXXXPXPXPPPPPPRXXXXXXXPGXGYXXXLSXXRPPXXP 588
PPPP P P PPP P P G PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 4.6
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 716 PPXPXGXGGXXXGXPPPPPXGGXGG 790
PP P G PPPPP GG
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 714 PXXXPGGXGGXXWXPPPPPP 773
P P G G PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782
Score = 23.4 bits (48), Expect(2) = 4.2
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 752 GXPPPPPXGGXGG 790
G PPPPP G G
Sbjct: 760 GPPPPPPPPGVAG 772
Score = 21.8 bits (44), Expect(2) = 4.2
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +2
Query: 719 PXPXGXGGXXXGXPPPPP 772
P P G PPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPP 765
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.49
Identities = 24/98 (24%), Positives = 25/98 (25%), Gaps = 1/98 (1%)
Frame = -2
Query: 842 PXPPPXXXXXXFPPPXXXXXXPXGGGGGGXPXXTPPPPXXXXGXFXXXXPXPXP-PPPPP 666
P PPP PP G P PPP G PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGN-----GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Query: 665 RXXXXXXXPGXGYXXXLSXXRPPXXPXXXPXXXAXRAP 552
R + PP P P A P
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP 404
Score = 29.1 bits (62), Expect = 1.1
Identities = 22/88 (25%), Positives = 22/88 (25%), Gaps = 3/88 (3%)
Frame = -2
Query: 842 PXPPPXXXXXXFPP---PXXXXXXPXGGGGGGXPXXTPPPPXXXXGXFXXXXPXPXPPPP 672
P PPP PP P PPP PPPP
Sbjct: 255 PIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPP 314
Query: 671 PPRXXXXXXXPGXGYXXXLSXXRPPXXP 588
PP P G S PP P
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.85
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 752 PXXTPPPPXXXXGXFXXXXPXPXPPPPPP 666
P PPPP G P PPPPPP
Sbjct: 5 PPGNPPPPPPPPG---FEPPSQPPPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = +2
Query: 731 GXGGXXXGXPPPPPXGGXGGXXKGGGXGXPXPXGGG 838
G GG G PPP GG GG GG G GG
Sbjct: 192 GFGGGSGG--PPPGPGGFGGFGGFGGEGHHHGGHGG 225
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +2
Query: 740 GXXXGXPPPPPXGGXGGXXKGGGXGXPXPXGGG 838
G G PPP G GG G G G P GG
Sbjct: 68 GITEGNAAPPPPGAEGGPGAGFG-GFPGAGPGG 99
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 23.4 bits (48), Expect(2) = 5.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 689 PXPPPPPP 666
P PPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 21.4 bits (43), Expect(2) = 5.9
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -2
Query: 761 GGXPXXTPPPP 729
GG P PPPP
Sbjct: 303 GGLPPPPPPPP 313
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 761 PPPPXGGXGGXXKGGGXGXPXPXGGGXXXPKXGG 862
PPPP G G GGG P G + GG
Sbjct: 99 PPPPRGPLFGPRIGGGHHGPLHGPHGGFGGRGGG 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,988
Number of Sequences: 5004
Number of extensions: 25542
Number of successful extensions: 274
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 569764052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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