Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_B22
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 135 5e-32
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 89 5e-18
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 85 9e-17
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 84 1e-16
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 84 1e-16
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 56 5e-08
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 56 5e-08
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 56 5e-08
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 56 5e-08
Z81486-13|CAE47465.1| 611|Caenorhabditis elegans Hypothetical p... 29 3.4
Z81486-12|CAC42272.1| 585|Caenorhabditis elegans Hypothetical p... 29 3.4
AY221631-1|AAP97492.1| 611|Caenorhabditis elegans muscarinic ac... 29 3.4
AL034391-3|CAE47471.1| 611|Caenorhabditis elegans Hypothetical ... 29 3.4
AL034391-2|CAA22301.2| 585|Caenorhabditis elegans Hypothetical ... 29 3.4
AF139093-1|AAD48771.1| 585|Caenorhabditis elegans muscarinic ac... 29 3.4
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 135 bits (326), Expect = 5e-32
Identities = 62/89 (69%), Positives = 69/89 (77%)
Frame = +3
Query: 219 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 398
V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAI NNP K +RS+GD E V F +
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75
Query: 399 VAGEKGFEAAGVTGPGGEPVKGSPYAADK 485
V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 76 VEGSKGLEAASVTGPDGGPVQGSKYAADR 104
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 88.6 bits (210), Expect = 5e-18
Identities = 44/85 (51%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +3
Query: 222 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFAV 398
I + G VKW++V YGFI+RND ++D+FVHQTAIA++ K +R++GD E V F +
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121
Query: 399 VAGEKGFEAAGVTGPGGEPVKGSPY 473
V G+ G EAA VTGP G+ V GS Y
Sbjct: 122 VEGKNGPEAANVTGPNGDNVIGSRY 146
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 84.6 bits (200), Expect = 9e-17
Identities = 42/86 (48%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Frame = +3
Query: 219 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFA 395
V+ + G VKW++V YGFI+R+D ++DVFVHQTAI++++ K +R++ D E V F
Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118
Query: 396 VVAGEKGFEAAGVTGPGGEPVKGSPY 473
+V G+ G EAA VTGP G V GS Y
Sbjct: 119 LVDGKNGPEAANVTGPAGVNVSGSKY 144
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 84.2 bits (199), Expect = 1e-16
Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Frame = +3
Query: 219 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 386
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 387 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 476
F +V G KG EAA VTGP GE V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 84.2 bits (199), Expect = 1e-16
Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Frame = +3
Query: 219 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 386
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 387 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 476
F +V G KG EAA VTGP GE V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 55.6 bits (128), Expect = 5e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +3
Query: 240 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 413
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79
Query: 414 GFEAAGVTGP-GGEPVKGS 467
G EA V+G G+ +KGS
Sbjct: 80 GREAYAVSGEVEGQGLKGS 98
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 55.6 bits (128), Expect = 5e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +3
Query: 240 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 413
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 414 GFEAAGVTGP-GGEPVKGS 467
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 55.6 bits (128), Expect = 5e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +3
Query: 240 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 413
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 414 GFEAAGVTGP-GGEPVKGS 467
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 55.6 bits (128), Expect = 5e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +3
Query: 240 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 413
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 414 GFEAAGVTGP-GGEPVKGS 467
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>Z81486-13|CAE47465.1| 611|Caenorhabditis elegans Hypothetical
protein Y40H4A.1b protein.
Length = 611
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 602 HKEMRVKKEALYHLSAVFSVAFSRWTPWGRSWP 700
++ R K+AL ++ + ++ W PW SWP
Sbjct: 173 YRPRRTTKKALTMIACTYIISLILWPPWIISWP 205
>Z81486-12|CAC42272.1| 585|Caenorhabditis elegans Hypothetical
protein Y40H4A.1a protein.
Length = 585
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 602 HKEMRVKKEALYHLSAVFSVAFSRWTPWGRSWP 700
++ R K+AL ++ + ++ W PW SWP
Sbjct: 173 YRPRRTTKKALTMIACTYIISLILWPPWIISWP 205
>AY221631-1|AAP97492.1| 611|Caenorhabditis elegans muscarinic
acetylcholine receptorlarge isoform protein.
Length = 611
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 602 HKEMRVKKEALYHLSAVFSVAFSRWTPWGRSWP 700
++ R K+AL ++ + ++ W PW SWP
Sbjct: 173 YRPRRTTKKALTMIACTYIISLILWPPWIISWP 205
>AL034391-3|CAE47471.1| 611|Caenorhabditis elegans Hypothetical
protein Y40H4A.1b protein.
Length = 611
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 602 HKEMRVKKEALYHLSAVFSVAFSRWTPWGRSWP 700
++ R K+AL ++ + ++ W PW SWP
Sbjct: 173 YRPRRTTKKALTMIACTYIISLILWPPWIISWP 205
>AL034391-2|CAA22301.2| 585|Caenorhabditis elegans Hypothetical
protein Y40H4A.1a protein.
Length = 585
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 602 HKEMRVKKEALYHLSAVFSVAFSRWTPWGRSWP 700
++ R K+AL ++ + ++ W PW SWP
Sbjct: 173 YRPRRTTKKALTMIACTYIISLILWPPWIISWP 205
>AF139093-1|AAD48771.1| 585|Caenorhabditis elegans muscarinic
acetylcholine receptor protein.
Length = 585
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 602 HKEMRVKKEALYHLSAVFSVAFSRWTPWGRSWP 700
++ R K+AL ++ + ++ W PW SWP
Sbjct: 173 YRPRRTTKKALTMIACTYIISLILWPPWIISWP 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,930,575
Number of Sequences: 27780
Number of extensions: 278746
Number of successful extensions: 904
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -