Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B21
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.70 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   2.1  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   4.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.9  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 312 QQCLTSNQMLQECV-EEYKKSVDSAEENMKDELDELSTKQENG 437
           ++CLT   M  ECV  EY+ +V   EE  + E D+ ++   NG
Sbjct: 245 KKCLTVG-MRPECVVPEYQCAVKRKEEKAQKEKDKPNSTTMNG 286


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 306 FKQQCLTSNQMLQECVEEYKKSVDSAEENMKDELDE 413
           F+  C T +  L    EE  K     +E ++  LDE
Sbjct: 421 FRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDE 456


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 306 FKQQCLTSNQMLQECVEEYKKSVDSAEENMKDELDE 413
           F+  C T +  L    EE  K     +E ++  LDE
Sbjct: 127 FRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDE 162


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 316 CCLNSYAFINLSTQFKHIKVGNRSSSLIS 230
           C L    F+N  T F   K   R++ L S
Sbjct: 65  CMLKKVGFVNADTTFNEEKFRERTTKLDS 93


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 225 SIEINEDDLLPTLICLNCVDK 287
           SIE+ +D  +P ++ +N +DK
Sbjct: 237 SIEMAKDAKVPIIVAINKIDK 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,363
Number of Sequences: 438
Number of extensions: 3830
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)