Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B20
         (901 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74033-3|CAA98477.1|  407|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.5  
Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical pr...    29   6.0  
AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class ho...    29   6.0  

>Z74033-3|CAA98477.1|  407|Caenorhabditis elegans Hypothetical
           protein F38B7.3 protein.
          Length = 407

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/62 (32%), Positives = 22/62 (35%)
 Frame = +1

Query: 655 QVXGGETRQDFKDXXRFPPGXXPXAPXCSDPGRLPGYXSALXSPSGXAXGPFPIXSPXXG 834
           Q  G +  Q   +    PP   P AP    PG  P   S    PSG    P     P  G
Sbjct: 147 QGPGAQPPQQQNNGGYVPPTVYPSAPPPVQPGYNPRPASGQSYPSGPQVPPAYGQYPQPG 206

Query: 835 YP 840
           YP
Sbjct: 207 YP 208


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
 Frame = +1

Query: 640 TKIDXQVXGGETRQDFKDXX-RFPPGXXPXAPXCSDPGRLPGYXSALXSPSGXAXGPFPI 816
           T  D Q    E R+   D     PP   P     S P    G  SAL   +G    P  +
Sbjct: 663 TLCDFQKEAEELRKHINDPKIPLPP---PTKMNLSAPSTSAGGSSALPPITGGPPPPPGL 719

Query: 817 XSPXXGYPXXXXXGPFPPXXGWVPXPP 897
                G P     G  PP  G  P PP
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPP 746


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
 Frame = +1

Query: 640 TKIDXQVXGGETRQDFKDXX-RFPPGXXPXAPXCSDPGRLPGYXSALXSPSGXAXGPFPI 816
           T  D Q    E R+   D     PP   P     S P    G  SAL   +G    P  +
Sbjct: 663 TLCDFQKEAEELRKHINDPKIPLPP---PTKMNLSAPSTSAGGSSALPPITGGPPPPPGL 719

Query: 817 XSPXXGYPXXXXXGPFPPXXGWVPXPP 897
                G P     G  PP  G  P PP
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPP 746


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
 Frame = +1

Query: 640 TKIDXQVXGGETRQDFKDXX-RFPPGXXPXAPXCSDPGRLPGYXSALXSPSGXAXGPFPI 816
           T  D Q    E R+   D     PP   P     S P    G  SAL   +G    P  +
Sbjct: 246 TLCDFQKEAEELRKHINDPKIPLPP---PTKMNLSAPSTSAGGSSALPPITGGPPPPPGL 302

Query: 817 XSPXXGYPXXXXXGPFPPXXGWVPXPP 897
                G P     G  PP  G  P PP
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPP 329


>Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical
           protein F55B12.1 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +1

Query: 520 QNQGIXQERTCEXKASKRPXTVKRPXCWRFXIGS--APLTSITKIDXQVXG-GETRQDFK 690
           +  GI +E++ E   SKR      P   +F + S  +PL S+ ++  Q+     ++    
Sbjct: 19  EETGIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTP 76

Query: 691 DXXRFPPGXXPXAPXCSDPGRLPG 762
                 PG  P       PGRLPG
Sbjct: 77  GTNAGVPGAFPYG-----PGRLPG 95


>AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class
           homeodomain protein protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +1

Query: 520 QNQGIXQERTCEXKASKRPXTVKRPXCWRFXIGS--APLTSITKIDXQVXG-GETRQDFK 690
           +  GI +E++ E   SKR      P   +F + S  +PL S+ ++  Q+     ++    
Sbjct: 19  EETGIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTP 76

Query: 691 DXXRFPPGXXPXAPXCSDPGRLPG 762
                 PG  P       PGRLPG
Sbjct: 77  GTNAGVPGEFPYG-----PGRLPG 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,024,789
Number of Sequences: 27780
Number of extensions: 275549
Number of successful extensions: 592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)