Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B17
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    30   0.50 
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    28   1.5  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    27   2.7  
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    27   4.7  

>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 406 SIIGS-DKQK*KCSRQRQSISDESTRDRLQNGTQFHEVQLSSRGHNI 543
           S +GS DK     ++Q +++S ES    LQNGT+   V++S  G  I
Sbjct: 181 SEVGSLDKAGGPLNQQNENLSAESDNTILQNGTRKSSVKMSDLGKRI 227


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 657 ETGVWKEILSLVNEKTTIFVIRQAYKFAAEFVWKLNDLR 773
           +T +WK +  LVNEK ++  +   +K AAE   ++ D+R
Sbjct: 540 QTYLWKALERLVNEKVSLGELTPVHKVAAE--KRIGDIR 576


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 706 VVFSLTKLRISFHTPVSKSQETPELWLTMARATSVNATPET 584
           +V S T++ ++  TP S S  T      +  +TS N  PET
Sbjct: 293 IVNSFTEMGLASTTPTSNSHSTENPLAIIPSSTSKNLLPET 333


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 603 TEVALAIVNHSSGVSWLLETGVWKEILSLVNEKTTIFVIRQAYKFAAE 746
           TE+A  I+ H   V W +   +  +I  L N  T+ F      K A++
Sbjct: 271 TEIAETIILHPKDVPWFVSDVLVNDIPHLFNSLTSYFSGEGVQKLASD 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,827
Number of Sequences: 5004
Number of extensions: 61902
Number of successful extensions: 201
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)