Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B17
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160           31   1.6  
04_01_0101 + 1041755-1041864,1041950-1042102,1042174-1042424,104...    29   4.9  
03_02_0211 - 6436275-6436361,6436969-6437235,6438475-6438543,643...    29   6.5  
03_01_0109 - 863381-863575,863749-863795,863893-863980,864078-86...    28   8.6  
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148...    28   8.6  
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559...    28   8.6  

>08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160
          Length = 749

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 540 YYRNLSVSTLPISIPVSGVAFTEVALAIVNHSSGVSWLLETGVWKEIL-SLVNEKTTIFV 716
           Y R       P S  +   A  E A+ I+NH S V  L++ G W  +  S+V+   T+ V
Sbjct: 299 YARTFPRGLGPKSPELRSEASRETAVVIMNHVSLVEMLMDVGQWTALFSSIVSRAATLEV 358

Query: 717 I 719
           +
Sbjct: 359 L 359


>04_01_0101 +
           1041755-1041864,1041950-1042102,1042174-1042424,
           1042878-1043060,1043163-1043310,1043787-1043958,
           1057226-1057366,1057478-1057624
          Length = 434

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 569 PNINPSLRGSIHGG-SSGHCQPQFRSFLALR 658
           PN+ P LR +IHG  +SG  +P    FLA+R
Sbjct: 298 PNLGPGLRENIHGAVASGDDEP-LEEFLAVR 327


>03_02_0211 -
           6436275-6436361,6436969-6437235,6438475-6438543,
           6439108-6439236,6439319-6439480,6439558-6439678,
           6439813-6439928,6440697-6440762,6441010-6441091,
           6441236-6441327,6441430-6441537,6441919-6442013,
           6442092-6442234,6442336-6442364,6442452-6442571,
           6442645-6442734,6443116-6443181,6443267-6443380,
           6443482-6443574
          Length = 682

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +2

Query: 305 VLNSYYADGLINKLTNASTDPEISFLGSLP-FLTNLLLEAINKSENAHVSAKVFLTRVLG 481
           VLN Y    L+  +T   + P+I  LG LP FL  L     + S      A   L+  L 
Sbjct: 185 VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADAALSEFLQ 244

Query: 482 IVCKTELN-FTKFNCPQ 529
            +  + +N F K    Q
Sbjct: 245 EIKNSPINEFVKLGGEQ 261


>03_01_0109 -
           863381-863575,863749-863795,863893-863980,864078-864159,
           864264-864420,864501-864583,864724-864955,865032-865146
          Length = 332

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 534 T*YYRNLSVSTLPISIPVSGVAFTEVALAIVNHSSGV-SWLLETGVWKEILSLVNEKTTI 710
           T Y  +  ++ L +       A T V   IVN SS V SW    G W E L LV  +   
Sbjct: 140 TNYLGHFLLTKLLLGRMAETAAATGVQGRIVNVSSSVHSWF--AGDWAEYLDLVTRRKIA 197

Query: 711 FVIRQAY 731
           +   QAY
Sbjct: 198 YDATQAY 204


>02_05_1326 - 35712102-35712473,35712608-35712720,35712944-35714857,
            35714942-35715135,35715237-35716786,35716946-35717049,
            35717258-35717399,35717692-35717910
          Length = 1535

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -1

Query: 604  VNA--TPETGIDIGRVDTLKFL*YYVPLRTIELREIEFRFANDPEYSRQKYFGADVSI 437
            VNA  TP+TG D+G+ D    L  +  + T++  + E    N+P  +    F ADV++
Sbjct: 940  VNAFVTPDTGNDMGKSDDYLDLPSFSSVHTVQNSKAE----NNPYKTTSSLFSADVNL 993


>02_01_0754 -
           5595813-5595887,5595973-5596071,5596136-5596327,
           5596992-5597129,5597415-5597501,5597583-5597669,
           5597795-5597956,5598089-5598225,5598483-5598602,
           5600668-5600773
          Length = 400

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +3

Query: 672 KEILSLVNEKTTIFVIRQAYKFAA-EFVWKLNDLRDVNSIXEVISYIIRPVSEE 830
           K++L+    ++ +  +R+  K A  +F    +DL+ + S+ ++I  ++RP+  E
Sbjct: 21  KKLLNCRELESRVSTVRENLKNAKKDFTKTEDDLKSLQSVGQIIGEVLRPLDNE 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,032,136
Number of Sequences: 37544
Number of extensions: 347708
Number of successful extensions: 806
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)