Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B17
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z83110-6|CAB05528.3|  545|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z81462-8|CAB03846.3|  545|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical
           protein Y54G9A.10 protein.
          Length = 365

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 28/75 (37%), Positives = 38/75 (50%)
 Frame = +3

Query: 501 SISRSSIVLKGT*YYRNLSVSTLPISIPVSGVAFTEVALAIVNHSSGVSWLLETGVWKEI 680
           SI  S IVLK   ++ NLSV T+     V  V F+E+ +A V      SW  ETG W+ +
Sbjct: 47  SIKCSYIVLKVRTFHMNLSVLTV-----VLIVQFSEILVAKV-----CSWPYETGFWR-L 95

Query: 681 LSLVNEKTTIFVIRQ 725
             L N   T   ++Q
Sbjct: 96  RGLSNASLTNTTLKQ 110


>Z83110-6|CAB05528.3|  545|Caenorhabditis elegans Hypothetical
           protein F57C2.6 protein.
          Length = 545

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 566 SPNINPSLRGSIHGGSSGHCQPQ-FRSFL 649
           S N NP LRG I  G SG   PQ FR F+
Sbjct: 470 SANSNPMLRGIITSGGSGGGGPQDFRRFV 498


>Z81462-8|CAB03846.3|  545|Caenorhabditis elegans Hypothetical
           protein F57C2.6 protein.
          Length = 545

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 566 SPNINPSLRGSIHGGSSGHCQPQ-FRSFL 649
           S N NP LRG I  G SG   PQ FR F+
Sbjct: 470 SANSNPMLRGIITSGGSGGGGPQDFRRFV 498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,292,514
Number of Sequences: 27780
Number of extensions: 336638
Number of successful extensions: 732
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)