Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B17
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   6.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   6.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.6  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 273 YCLRNFLNRIMYLI 314
           YCL +FLN I+Y +
Sbjct: 148 YCLFSFLNTIVYCV 161


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 109 YYQNKCHNRPNRTTPKINFQHLNLKEFPI 23
           YY     N P  TT ++NF  ++++   +
Sbjct: 427 YYHKYKENLPKYTTEELNFPGVSIESVTV 455


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 753 WKLNDLRDVNSIXEVI 800
           W++ND+  ++SI  +I
Sbjct: 98  WEMNDINKIDSIINII 113


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 109 YYQNKCHNRPNRTTPKINFQHLNLKEFPI 23
           YY     N P  TT ++NF  ++++   +
Sbjct: 427 YYHKYKENLPKYTTEELNFPGVSIESVTV 455


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 109 YYQNKCHNRPNRTTPKINFQHLNLKEFPI 23
           YY     N P  TT ++NF  ++++   +
Sbjct: 53  YYHKYKENLPKYTTEELNFPGVSIESVTV 81


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 145 SRFLEPCCEKQQYYQNKCHNRPNRT 71
           SR ++PC  K      +C   PN T
Sbjct: 76  SRSIDPCASKYCGIGKECELSPNST 100


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 721 LITKMVVFSLTKLRISFHTPVS 656
           L+T  VV ++  L ++F +PV+
Sbjct: 309 LVTLSVVVTIAVLNVNFRSPVT 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,838
Number of Sequences: 438
Number of extensions: 4477
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)