Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B16
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    40   4e-04
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    29   0.66 
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    29   0.87 
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    27   2.7  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.6  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   8.1  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    26   8.1  

>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
 Frame = +2

Query: 344 TRMEEDNIQDKERF-ASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILR 520
           T ME+  +  +E + A R +H E+ERRRR  ++  I EL+++VP C     + +K +IL+
Sbjct: 73  TTMEKPCVGSEEWYKAKRLSHKEVERRRREAISEGIKELANIVPGC-----EKNKGSILQ 127

Query: 521 MAVAHMKALRGTGNTSTDGTYKPSFLTDQELKHLILEAA 637
               ++++L+       + +     + D  ++ L  E A
Sbjct: 128 RTAQYIRSLKEMEEMCREKSNLEKLVADHTIQELARENA 166


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
 Frame = +2

Query: 368 QDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSA----------------LARKP 499
           Q+    + R  H  IE+R R+ +   I EL D VPT  +                L+RK 
Sbjct: 420 QNLSPLSKRSAHNMIEKRYRSNLNDKIAELRDAVPTLRSGYNSTTADELKGTYVPLSRKL 479

Query: 500 DKLTILRMAVAHMKALR 550
           +K TIL  A  ++K+L+
Sbjct: 480 NKATILSKATEYIKSLQ 496


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 83  WKMAFVSREVL*IFVLCNCWKHLRIVNEIFYYN 181
           W   F+ + +    VLC  W   R+VN++F YN
Sbjct: 346 WFPGFIFKGLSYFTVLCWIWPKNRVVNQLFGYN 378


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +2

Query: 578 TYKPSFLTDQELKHLILEAADGFLFVVSCDTGRIIYVSDSIAPVLNYSQGEWYSSCLYDQ 757
           ++  S +TD+ L   ++++ DG   ++    G +I  S    P+       +  S L D+
Sbjct: 168 SWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227

Query: 758 VHPD 769
             PD
Sbjct: 228 NEPD 231


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 539 KALRGTGNTSTDGTYKPS 592
           K +RG GN +TDG +K S
Sbjct: 209 KVVRGDGNAATDGRFKAS 226


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 452 ELSDMVPTCSALARKPDKLTILRM 523
           EL D++P    LAR PD  T+L +
Sbjct: 300 ELIDLIPFLEHLARVPDVSTVLNL 323


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +1

Query: 430 QDDGVYHGTI*YGSNMLRTRPEARQANHTAYGSSSHESIKRHWQYFYRWNI 582
           Q DG++     Y        PE    ++    SS H +  ++W +  RW+I
Sbjct: 35  QSDGIHETNSEYDEKKREESPEVIDISNLI--SSDHPAHPQNWHWAKRWSI 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,462,709
Number of Sequences: 5004
Number of extensions: 71245
Number of successful extensions: 205
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)