Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B16
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    49   5e-08
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             42   6e-06
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   1.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   2.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   6.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   8.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 49.2 bits (112), Expect = 5e-08
 Identities = 34/102 (33%), Positives = 46/102 (45%)
 Frame = +2

Query: 467 VPTCSALARKPDKLTILRMAVAHMKALRGTGNTSTDGTYKPSFLTDQELKHLILEAADGF 646
           VPT S L +KPD  T+    V         G+T TD     +  T+  L   I +A +GF
Sbjct: 108 VPTKSILEKKPDVTTV--ELVDATDPGEHNGDTVTDVEAGLASRTNP-LDDSISQANEGF 164

Query: 647 LFVVSCDTGRIIYVSDSIAPVLNYSQGEWYSSCLYDQVHPDD 772
             V+S   G ++Y + SI   L Y +  W      D VHP D
Sbjct: 165 CAVISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYVHPKD 206


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 42.3 bits (95), Expect = 6e-06
 Identities = 31/102 (30%), Positives = 44/102 (43%)
 Frame = +2

Query: 467 VPTCSALARKPDKLTILRMAVAHMKALRGTGNTSTDGTYKPSFLTDQELKHLILEAADGF 646
           VPT S L +KP+ +                G+T TD     +  T+  L   I +A +GF
Sbjct: 108 VPTKSILEKKPELVDATDPG-------EHNGDTVTDVEAGLASRTNP-LDDSISQANEGF 159

Query: 647 LFVVSCDTGRIIYVSDSIAPVLNYSQGEWYSSCLYDQVHPDD 772
             V+S   G ++Y + SI   L Y +  W      D VHP D
Sbjct: 160 CAVISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYVHPKD 201


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 374 KERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKAL 547
           K+   SR  H E+E+ RR  +   + +L  +VP     +R    L +L  A   +K+L
Sbjct: 44  KKSQGSRTTHNELEKNRRAHLRNCLEKLKVLVPLGPETSRH-TTLGLLTKAKRFIKSL 100


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -1

Query: 424 PATFNLAMIFTTCKTLLVLNIVLLHPCVFSTTSVV 320
           P  +NL M+        V  +  ++PC+F   ++V
Sbjct: 210 PIYYNLTMVKLNWPKKRVTKMSSINPCIFDNATIV 244


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 297 ARRFCKSFAGSAPGIVGATADIGQQTHY 214
           ARRF  ++   A GIVG      +Q  Y
Sbjct: 400 ARRFLNNYLFLAVGIVGGACSDVEQNFY 427


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 374 KERFASRENHCE--IERRRRNK-MTAYITELSDMVPTCSALARKPDK 505
           +E +A     C+  I+  R+ K + A ITE   ++PT + +AR  D+
Sbjct: 358 EETYALAPAGCDLTIDNLRKAKYLRACITESLRLIPTTTCIARILDE 404


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 66  VVGCCNGKWRLCRVKY 113
           ++  CNG WR  R+ Y
Sbjct: 51  ILPVCNGLWRWIRLTY 66


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 66  VVGCCNGKWRLCRVKY 113
           ++  CNG WR  R+ Y
Sbjct: 89  ILPVCNGLWRWIRLTY 104


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 135 LHKTNIYNTSRDTNAIFHYNN 73
           +H  N YN +   N   +YNN
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNN 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,551
Number of Sequences: 438
Number of extensions: 5012
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)