Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_B14
(969 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.14
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 0.17
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.56
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 5.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 9.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.14
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 742 PXXPXPPPPXNPPXXXXXXXGAPXPPXPPP 831
P PPPP PP G P PP PPP
Sbjct: 756 PIMGGPPPP--PPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +3
Query: 756 PPPPXKPXXXXXXXXXGXXXPXPPPXKXGXXPXXPPXGGGPPPXXXSS 899
P P P G P PPP G P PP PPP S+
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP----PPPPAVSA 787
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Frame = +3
Query: 756 PPPPXKPXXXXXXXXXGXXXPXPPPXKXGXXPXXPP-----XGGGPPP 884
PPPP P P PPP P PP G GPPP
Sbjct: 732 PPPP--PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 751 PXPPPPXNPPXXXXXXXGAPXPPXPPPXRXG 843
P P P P G P PP PPP G
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +1
Query: 760 PPPXNPPXXXXXXXGAPXPPXPPPXRXG 843
PPP PP P PP PP G
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +3
Query: 741 PPXXXPPPPXKPXXXXXXXXXGXXXPXPPPXKXGXXPXXPPXGGGPP 881
P PP +P P PPP P PP GPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPP-PPPMSVPPPPSAPPMPAGPP 1728
Score = 27.5 bits (58), Expect(2) = 0.17
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 742 PXXPXPPPPXNPPXXXXXXXGAPXPPXPP 828
P P PP P AP PP PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPP 1711
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 742 PXXPXPPPPXNPPXXXXXXXGAPXPPXP 825
P PPPP PP AP PP P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPP-SAPPPPLP 1736
Score = 22.6 bits (46), Expect(2) = 0.17
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1
Query: 919 PXPPTXKXXPAGXPPTP 969
P PP+ PAG P P
Sbjct: 1715 PPPPSAPPMPAGPPSAP 1731
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.9 bits (64), Expect = 0.56
Identities = 25/78 (32%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Frame = -2
Query: 968 GVGGXPAGXXXXVGGXGXXGXXXXGXXXXXXXXXXXXXXGXXPXLXGGGXGGXGAP-XXX 792
G GG P G GG G G P GGG GG G
Sbjct: 196 GSGGPPPGPGGF-GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254
Query: 791 XXXXGGFXGG-GGXGXXG 741
GGF GG GG G G
Sbjct: 255 GGGPGGFGGGPGGHGGPG 272
Score = 29.9 bits (64), Expect = 0.56
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -2
Query: 827 GGXGGXGAPXXXXXXXGGFXGGGGXGXXGXXXXXXXRXXXGGGGGVF 687
GG GG G GGF GG G G GGG G F
Sbjct: 208 GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254
Score = 29.1 bits (62), Expect = 0.98
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 830 GGGXGGXGAPXXXXXXXGGFXGGGGXG 750
GG GG G P GGF G GG G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEG 217
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = -2
Query: 827 GGXGGXGA-PXXXXXXXGGFXGGGGXGXXGXXXXXXXRXXXGGGGG 693
GG GG G P GGF GG G G GGG G
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = -2
Query: 830 GGGXGGX-GAPXXXXXXXGGFXGGGGXGXXGXXXXXXXRXXXGGGG 696
GGG GG G P GGF GGG G G G GG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGF--GGGLGGFGGGPGGFGGGPGGHGG 270
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 5.3
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = -2
Query: 842 PXLXGGGXGGXGAPXXXXXXXGGFXGGGGXGXXGXXXXXXXRXXXGGGGG 693
P GG G G GGF GG G G R GG GG
Sbjct: 5 PGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGG--GRGGARGGRGGRGG 52
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 6.9
Identities = 17/60 (28%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Frame = +3
Query: 741 PPXXXPP-PPXKPXXXXXXXXXGXXXPXPPPXKXGXX--PXXPPXGGGPPPXXXSSXXXP 911
PP P PP P P PP G P PP PPP + P
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 25.8 bits (54), Expect = 9.2
Identities = 18/74 (24%), Positives = 19/74 (25%), Gaps = 3/74 (4%)
Frame = +3
Query: 756 PPPPXKPXXXXXXXXXGXXXPXPPPXKXGXXPXXPPXGGGPPPXXXSSXXXPPXTXXXNX 935
P PP P PPP PP G G PP +
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGS 350
Query: 936 XXXP---RRXPPHP 968
P R PP P
Sbjct: 351 IPLPPQGRSAPPPP 364
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/53 (28%), Positives = 15/53 (28%)
Frame = +3
Query: 741 PPXXXPPPPXKPXXXXXXXXXGXXXPXPPPXKXGXXPXXPPXGGGPPPXXXSS 899
PP PP KP P P G P P PP SS
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSS 1244
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 757 PPPPXNPPXXXXXXXGAPXPPXPP 828
PPPP PP P PP PP
Sbjct: 9 PPPP--PPPPGFEPPSQPPPPPPP 30
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 9.2
Identities = 17/74 (22%), Positives = 19/74 (25%), Gaps = 1/74 (1%)
Frame = +1
Query: 751 PXPPPPXNPPXXXXXXXGAPXPP-XPPPXRXGXXXXXXXXXXXXXXXXXPXXXXPXQPXP 927
P P P P AP P PPP P P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 928 PTXKXXPAGXPPTP 969
P+ P+ PP P
Sbjct: 185 PSAPSLPSAVPPMP 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,749,619
Number of Sequences: 5004
Number of extensions: 19950
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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