Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B13
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-12|CAA92517.2|   86|Caenorhabditis elegans Hypothetical p...   100   2e-21
Z73910-1|CAA98134.2|  523|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z68227-12|CAA92517.2|   86|Caenorhabditis elegans Hypothetical
           protein F49C12.13 protein.
          Length = 86

 Score =  100 bits (239), Expect = 2e-21
 Identities = 41/83 (49%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
 Frame = +3

Query: 141 LIPIFVFSILWGVVGIICPIFAPKGPNRGIIQVVLILTAATCWLFWLCAYMAQMNPLIGP 320
           LIP+   S  W ++G   P   PKGPNRGIIQ+++I+TA  CW+FW+  ++ Q+NPLIGP
Sbjct: 4   LIPLVSVSAFWAIIGFGGPWIVPKGPNRGIIQLMIIMTAVCCWMFWIMVFLHQLNPLIGP 63

Query: 321 RLSNETLIWISRTWG---NKINN 380
           +++ +T+ WIS  WG   N INN
Sbjct: 64  QINVKTIRWISEKWGDAPNVINN 86


>Z73910-1|CAA98134.2|  523|Caenorhabditis elegans Hypothetical
           protein M117.1 protein.
          Length = 523

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 111 SNYHLKMGYSLIPIFVFSILWGVVGIICPIFAP 209
           +NYH+ + + +    ++S  +GVVG +C  ++P
Sbjct: 179 TNYHVALVFRIFQGILYSADFGVVGYVCSKWSP 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,386,257
Number of Sequences: 27780
Number of extensions: 273819
Number of successful extensions: 535
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)