Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B12
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.24 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.2  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   5.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 20/57 (35%), Positives = 21/57 (36%)
 Frame = -2

Query: 799 GGAXPPXXGGGFFXXVXXGGXGPV*KNPXPGXPXGGGGPXGXXXKKXXFGGXPPNXG 629
           G   PP   GGF      GG G    +   G    GGGP G       FGG P   G
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEG----HHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248



 Score = 29.1 bits (62), Expect = 0.98
 Identities = 27/80 (33%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
 Frame = -2

Query: 862 GGXXGGAXXGGKRGXXXXTXRGGAXPPXXGGGFFXXVXXG-GXGPV*KNPXPGXPXG-GG 689
           GG  GG   GG  G        G      G G       G G GP       G P G GG
Sbjct: 187 GGGFGG-FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP---GGFEGGPGGFGG 242

Query: 688 GPXGXXXKKXXFGGXPPNXG 629
           GP G       FGG P   G
Sbjct: 243 GPGGFGGGLGGFGGGPGGFG 262


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
 Frame = +3

Query: 600 PPXGGVFXXXPXLGGXP-PXXXFFXXXPXGPPPPXGXPGXGFFXTGPXPP 746
           PP   V    P     P P        P  PPPP G  G G     P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
 Frame = +1

Query: 796 PPGXXXXXPP---FFPPXXPPPXP 858
           PPG     PP   F PP  PPP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
 Frame = -2

Query: 919 PXGKKGGKXXFXPPXXXEXGGXXG---GAXXGGKRGXXXXTXRGGAXPPXXGG 770
           P G+ GG+  F        GG  G   G   GG RG      RGG+     GG
Sbjct: 134 PAGR-GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGG 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,352
Number of Sequences: 5004
Number of extensions: 26591
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)