Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B10
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...   244   1e-65
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    33   0.053
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    29   0.86 
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    27   4.6  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   6.1  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   8.1  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   8.1  

>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score =  244 bits (597), Expect = 1e-65
 Identities = 120/241 (49%), Positives = 154/241 (63%), Gaps = 1/241 (0%)
 Frame = +3

Query: 105 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDP-NVEVIVGVPAIYLSYVKTIIPDNVE 281
           M RKF VGGN+KMNG    +  I+  L    L+  +VE ++    +YL   +  +  ++ 
Sbjct: 1   MARKFFVGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNMYLITTRQQVKKDIG 60

Query: 282 VAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESG 461
           V AQN +    GA+TGE S   + D G+ + + GHSERRTIF E DE VA+K   ALE G
Sbjct: 61  VGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQG 120

Query: 462 LKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQ 641
           L V+ACIGETL ERE+ +T  VV RQL A+   +   W  IV+AYEPVWAIGTGKTATP+
Sbjct: 121 LTVVACIGETLAEREANETINVVVRQLNAIADKV-QNWSKIVIAYEPVWAIGTGKTATPE 179

Query: 642 QAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGXLVGGASLXPE 821
           QAQ+VH  +R W +  +  SV++ +R+ YGGSV   N KE     DIDG LVGGASL PE
Sbjct: 180 QAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLKPE 239

Query: 822 F 824
           F
Sbjct: 240 F 240


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 33.1 bits (72), Expect = 0.053
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = -2

Query: 413 FTKNCSSFRMTKYNPIYSNVFDHSG*NFTSKSSFWRLPTVLGCNFDIIRNDSLH 252
           F  + ++   TK N + SN+F+H+  + T +SS     T L     IIRNDS H
Sbjct: 26  FHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACNTCL----KIIRNDSFH 75


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 594 YEPVWAIGTGKT--ATPQQAQDVHHALRNWLSANVSGSVSDAVRI 722
           Y  +W++G       TP+  + VH  LR WL   V G   DA+ +
Sbjct: 172 YLHLWSVGQPDLNWETPKVREAVHDILRFWLDRGVDGFRLDAINM 216


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 737 RATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLGSSSLACTNS 609
           +AT    + + Y P  +G     K   + LSL  + ++ C NS
Sbjct: 165 KATKFPHFGILYHPESVGSSKSLKIFKNFLSLADTPNIQCVNS 207


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 669 EEHGGHLEPVGE*QSCLYQ*PIQVHRQAQYFP 574
           + +GG+L P  E  S  ++ PI++ R A Y+P
Sbjct: 69  KSYGGNLAPFDEEFSFHFRGPIELKRFAVYYP 100


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -3

Query: 640 WGVAVLPVPIAHTGS*ASTIFSHLSPMADTKAFNCLKTTSSVLPDSLSSRVSPIQAMTF 464
           + + +LP  I    S A  +F   +P   ++ F CL   + +L   L+S V  +Q  ++
Sbjct: 226 YSLFLLPRLIRKQLSDAPIVFFLHAPFCTSEVFRCLSKRAEILKGVLASNVIAMQTDSY 284


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 568 SPMADTKAFN-CLKTTSSVLPDSLSSRVSP 482
           SP+  TK+FN  L ++SS+L   + S  SP
Sbjct: 220 SPLTKTKSFNDALTSSSSILKPCMPSIASP 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,488,474
Number of Sequences: 5004
Number of extensions: 75891
Number of successful extensions: 250
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)