Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_B10
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 289 3e-78
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 286 2e-77
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 280 9e-76
03_05_1169 + 30892888-30892916,30894786-30894822,30895091-308951... 39 0.006
09_01_0088 + 1268120-1268139,1268288-1268361,1268500-1268750,126... 34 0.13
01_04_0083 - 15838922-15839065,15839153-15839443,15839555-158396... 32 0.52
02_03_0230 + 16620856-16620991,16622157-16622239,16632090-166321... 31 1.2
01_06_0627 - 30705604-30706977 29 3.7
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 29 6.4
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 28 8.5
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 28 8.5
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 28 8.5
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 289 bits (708), Expect = 3e-78
Identities = 134/238 (56%), Positives = 172/238 (72%), Gaps = 1/238 (0%)
Frame = +3
Query: 114 KFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQ 293
KF VGGNWK NG K+ ++++V L L+P+V+V+V P IY+ VK + D +EV+AQ
Sbjct: 54 KFFVGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIYIDQVKNSLTDRIEVSAQ 113
Query: 294 NCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVI 473
N W GA+TGEIS + D+G WVILGHSERR + GE D+ + +K A+AL +KVI
Sbjct: 114 NVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVKVI 173
Query: 474 ACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQD 653
ACIGE LEERE+GKT +V F+Q+KA +I W ++V+AYEPVWAIGTGK ATP+QAQ+
Sbjct: 174 ACIGELLEEREAGKTFDVCFKQMKAFADSI-TNWADVVIAYEPVWAIGTGKVATPEQAQE 232
Query: 654 VHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGXLVGGASL-XPEF 824
VH A+R+WL NVS V+ +RI YGGSV AAN ELA +DIDG LVGGASL P+F
Sbjct: 233 VHAAVRDWLKTNVSPEVASGIRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDF 290
>01_06_1301 +
36122797-36122838,36122958-36123033,36123145-36123268,
36123675-36123759,36124076-36124208,36124712-36124806,
36124982-36125060,36125205-36125287,36125505-36125555
Length = 255
Score = 286 bits (701), Expect = 2e-77
Identities = 140/242 (57%), Positives = 171/242 (70%), Gaps = 2/242 (0%)
Frame = +3
Query: 111 RKFVVGGNWKMNGDKNQINEIVNNLKKG--PLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 284
RKF VGGNWK NG + +IV L + P + VEV+V P ++L VK ++ + V
Sbjct: 4 RKFFVGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSV 63
Query: 285 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 464
AAQNCW GAFTGEIS M+ ++ V WVILGHSERR + GE + VA+K+A+AL G+
Sbjct: 64 AAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGI 123
Query: 465 KVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQ 644
KVIACIGETLE+RE+G T EVV Q KA+ I D W N+VLAYEPVWAIGTGK ATP Q
Sbjct: 124 KVIACIGETLEQREAGTTMEVVAAQTKAIAEKISD-WTNVVLAYEPVWAIGTGKVATPAQ 182
Query: 645 AQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGXLVGGASLXPEF 824
AQ+VH LR WL NVS +V+++ RI Y GSV AN KELA+ D+DG LVGGASL PEF
Sbjct: 183 AQEVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFLVGGASLKPEF 242
Query: 825 VE 830
V+
Sbjct: 243 VD 244
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 280 bits (687), Expect = 9e-76
Identities = 136/244 (55%), Positives = 178/244 (72%), Gaps = 2/244 (0%)
Frame = +3
Query: 138 KMNGDKNQINEIVNNLKKGPLDPN--VEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSP 311
++NG +Q+++IV L +G + VEV+V P ++L VK+ + ++VAAQNCW
Sbjct: 4 ELNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKK 63
Query: 312 KGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGET 491
GAFTGE+S M+ ++ + WVILGHSERR++ GE +E V +KVA+AL GLKVIAC+GET
Sbjct: 64 GGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGET 123
Query: 492 LEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALR 671
LE+RESG T +VV Q KA+ I D W N+V+AYEPVWAIGTGK ATP QAQ+VH LR
Sbjct: 124 LEQRESGSTMDVVAAQTKAISERIKD-WTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLR 182
Query: 672 NWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGXLVGGASLXPEFVEX*MLIIN 851
WL+ANVS V+++ RI YGGSVT AN KELA+ D+DG LVGGASL PEF++ IIN
Sbjct: 183 KWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFID----IIN 238
Query: 852 NALI 863
+A +
Sbjct: 239 SATV 242
>03_05_1169 +
30892888-30892916,30894786-30894822,30895091-30895146,
30895192-30895306,30896063-30896127,30896218-30896299,
30896420-30896479
Length = 147
Score = 38.7 bits (86), Expect = 0.006
Identities = 25/55 (45%), Positives = 31/55 (56%)
Frame = +3
Query: 648 QDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGXLVGGASL 812
Q VH LR L+ NV ++ R S TA+N KELA D++G LV GASL
Sbjct: 78 QTVHGGLRKLLTTNVRIHMNHLCR-----SCTASNCKELAVQPDLNGFLVSGASL 127
>09_01_0088 +
1268120-1268139,1268288-1268361,1268500-1268750,
1268845-1269048,1269488-1269805,1269893-1269910
Length = 294
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +3
Query: 39 LSTLQLIHDIC*KVGSSNKITEMGRKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPN 209
L+ LQ H + +V S I+E+ RKF + G NW ++ ++ + + LKKG PN
Sbjct: 92 LNILQWNHKLYKRVYYSKMISEVERKFAIDGRANNWILHQLDGKLRQYKSKLKKGYYKPN 151
Query: 210 V 212
+
Sbjct: 152 L 152
>01_04_0083 -
15838922-15839065,15839153-15839443,15839555-15839653,
15839733-15839825,15839913-15840116,15840209-15840459,
15841045-15841096,15841527-15841625,15842222-15842299
Length = 436
Score = 32.3 bits (70), Expect = 0.52
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 39 LSTLQLIHDIC*KVGSSNKITEMGRKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPN 209
L+ LQ H + +V I+E+ RKF + G NW ++ + + + LKKG PN
Sbjct: 137 LNILQWNHKLYKRVYHPKMISEVERKFAIDGRANNWNLHQLDGKWRQYKSKLKKGYYKPN 196
Query: 210 VEV 218
+ +
Sbjct: 197 LSM 199
>02_03_0230 +
16620856-16620991,16622157-16622239,16632090-16632149,
16632795-16632903,16633285-16633337,16633503-16633559,
16633730-16633846
Length = 204
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +3
Query: 405 FGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENI 584
F E+ EL VA ES L + +T EE ++ K ++ F + +ALV+A +N+
Sbjct: 142 FIERAELKQMMVATLAESDLNLT---DQTFEEADTNKDGKIDFEEWQALVNAHPCLLKNM 198
Query: 585 VLAY 596
LAY
Sbjct: 199 TLAY 202
>01_06_0627 - 30705604-30706977
Length = 457
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 600 PVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYG--GSVTAANAKELA 767
PV+ +G + ++ V HA WL A + SV V + +G GS +AA KE+A
Sbjct: 223 PVYCVGPLVASGEEEGGGVRHACLAWLDAQPARSV---VFLCFGSMGSFSAAQLKEIA 277
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 293 LGCNFDIIRNDSLHIRQVNSRNTNNYL 213
LG NF++ RND L I V +N L
Sbjct: 104 LGLNFEVYRNDELTIEDVKRKNPRGIL 130
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 28.3 bits (60), Expect = 8.5
Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 1/186 (0%)
Frame = +3
Query: 51 QLIHDIC*KVGSSNKITEMGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGV 230
Q+ H++C N G+ + ++G Q+ E+V + K +V++
Sbjct: 325 QMFHNLCFAWALFNHFVMSGQADIE----LLSGAGIQLTEVVKDAKTTKDPDYCDVLIST 380
Query: 231 PAIYLSYV-KTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIF 407
+ + K ++ + +A N S +G + +S A I ++ H R
Sbjct: 381 INSIMGWTEKRLLAYHETFSASNI-DSMQGIVSIGVSTAKILAEDIS-----HEYHRKRK 434
Query: 408 GEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIV 587
E D +V K+ + S L+ + +EE +S ++ L L AIGD
Sbjct: 435 QETDVVVHSKIETYIRSSLRT--AFAQKMEEADSKRSSRHPVPVLSILAKAIGDLATKEK 492
Query: 588 LAYEPV 605
Y PV
Sbjct: 493 TVYSPV 498
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = +3
Query: 96 ITEMGRKFVVGGNWKMNGDKN-----QINEIVNNLKKG 194
+ ++ ++F+ GGN +NGD + I E+V L+KG
Sbjct: 709 LNKLAKRFLHGGNGAVNGDSSLPSRAYIEEVVQELQKG 746
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 785 INVFAGCKLLSISSCDRATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLG 636
+ FA K + SS ++ V +T+ Y P+ I ++ + K + ILS G
Sbjct: 963 LKAFASIKQVIFSSMEKNNVPHTFWSSYLPSLIQQKGIAKRIASILSGYG 1012
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,017,403
Number of Sequences: 37544
Number of extensions: 477657
Number of successful extensions: 1176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -