Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B09
         (892 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.           25   0.60 
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   0.60 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   3.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.8  

>S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.
          Length = 35

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +3

Query: 549 QQKTENLKTCFLNLKQSFPTVESANNLSLVE 641
           +Q+T++L   F +L++S PT+ S + LS ++
Sbjct: 6   RQRTQSLNEAFASLRKSIPTMPS-DKLSKIQ 35


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +3

Query: 549 QQKTENLKTCFLNLKQSFPTVESANNLSLVE 641
           +Q+T++L   F +L++S PT+ S + LS ++
Sbjct: 106 RQRTQSLNEAFASLRKSIPTMPS-DKLSKIQ 135


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 145 GVLADDFXSDYSGCDLAMHQEQC*R---QSPXKLKQHC 249
           G++ +D+ S+Y  CDL  + +   R   Q P +  QHC
Sbjct: 71  GMVFNDYSSEYEKCDLPFNIDCTSRPKLQEP-QPSQHC 107


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 460 TVPINSSTLCATRTETG 510
           T+ INS T+C T +  G
Sbjct: 146 TMEINSDTMCVTFSNLG 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,175
Number of Sequences: 336
Number of extensions: 3745
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)