Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B08
         (1033 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    27   0.31 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   5.1  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 281 STGQATAASMSFG-VSANPKS*STRRLGQW 195
           STGQ   A+ SFG V++ P S S+  LGQ+
Sbjct: 47  STGQRLPANFSFGQVNSPPSSTSSGSLGQF 76


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 81  VEAVQANFSLRFTIPIQIQPKMSLLPFVLGDW 176
           +E    N SL   IPI +      + F+ G W
Sbjct: 276 IEMFLCNMSLLTVIPIHVWTSKEKISFLRGFW 307


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,787
Number of Sequences: 336
Number of extensions: 1870
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 29382645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)