Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_B07
(980 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 33 0.26
12_02_0643 - 21461123-21461902 31 1.1
12_02_0640 - 21447470-21448309 31 1.1
12_02_0635 - 21430245-21431156 31 1.1
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.1
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 31 1.9
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 2.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 3.2
08_02_0912 - 22536181-22537011 30 3.2
06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979 29 4.3
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 29 5.7
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 7.5
>12_02_1174 - 26696869-26698191
Length = 440
Score = 33.5 bits (73), Expect = 0.26
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 804 PPPPKKXTKXXSXFXFWGRXPPPXKKKXXXXLPXQXXXPPPPP 932
PPPP+ T+ PPP K + LP PPPPP
Sbjct: 126 PPPPRTRTRVEPP-----HRPPPVKPQPPPSLPPPPPPPPPPP 163
>12_02_0643 - 21461123-21461902
Length = 259
Score = 31.5 bits (68), Expect = 1.1
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 804 PPPPKKXTKXXSXFXFWGRXPPPXKKKXXXXLPXQXXXPPPP 929
PPP K K S R PPP +++ L + PPPP
Sbjct: 184 PPPTTKKKKPQSSRRPPSRTPPPERRESPSPLRGRPRTPPPP 225
>12_02_0640 - 21447470-21448309
Length = 279
Score = 31.5 bits (68), Expect = 1.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 804 PPPPKKXTKXXSXFXFWGRXPPPXKKKXXXXLPXQXXXPPPPP 932
PPP K K S R PPP +++ + PPPPP
Sbjct: 192 PPPTTKKKKPQSSRRPPARTPPPERRESPSPPRGRPRTPPPPP 234
>12_02_0635 - 21430245-21431156
Length = 303
Score = 31.5 bits (68), Expect = 1.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 804 PPPPKKXTKXXSXFXFWGRXPPPXKKKXXXXLPXQXXXPPPPP 932
PPP K K S R PPP +++ + PPPPP
Sbjct: 189 PPPTTKKKKPQSSRRPPARTPPPERRESPSPPRGRPRTPPPPP 231
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.5 bits (68), Expect = 1.1
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +3
Query: 798 AXPPPPKKXTKXXSXFXFWGRXPPPXKKKXXXXLPXQXXXPPPPPXXKXXXXXKXXXPP 974
A PPPP G PPP K P + PPPPP PP
Sbjct: 324 AAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 30.7 bits (66), Expect = 1.9
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +3
Query: 804 PPPPKKXTKXXSXFXFWGRX-PPPXKKKXXXXLPXQXXXPPPP 929
PPPP K + W + PPP +P PPPP
Sbjct: 132 PPPPFKGDHYGGVYQNWQQNGPPPPPDHVLKKVPSHPSPPPPP 174
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.3 bits (65), Expect = 2.5
Identities = 22/90 (24%), Positives = 26/90 (28%), Gaps = 4/90 (4%)
Frame = +3
Query: 717 ASXXPPXPXPXTXXXXXFFFFXF*KKXAXPPPPKKX----TKXXSXFXFWGRXPPPXKKK 884
A PP P P F F + PPPP + + PPP
Sbjct: 53 APPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPP 112
Query: 885 XXXXLPXQXXXPPPPPXXKXXXXXKXXXPP 974
P PPPPP + PP
Sbjct: 113 PPSPPPSAPPPPPPPPTQPPPREAQLAPPP 142
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.9 bits (64), Expect = 3.2
Identities = 21/82 (25%), Positives = 23/82 (28%)
Frame = +3
Query: 729 PPXPXPXTXXXXXFFFFXF*KKXAXPPPPKKXTKXXSXFXFWGRXPPPXKKKXXXXLPXQ 908
PP P P + F PPPP S + PPP L
Sbjct: 548 PPPPPPPSGNKPAF------SPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPS 601
Query: 909 XXXPPPPPXXKXXXXXKXXXPP 974
PPPPP PP
Sbjct: 602 PPPPPPPPPILPNRSVPPPPPP 623
Score = 29.1 bits (62), Expect = 5.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 896 SPXPXXXPPPPXXLXXXXXXXXXXPPPP 979
SP P PPPP L PPPP
Sbjct: 562 SPPPPPPPPPPPPLPQSNYASSQPPPPP 589
>08_02_0912 - 22536181-22537011
Length = 276
Score = 29.9 bits (64), Expect = 3.2
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +3
Query: 789 KKXAXPPPPKKXTKXXSXFXFWGRXPPPXKKKXXXXLPXQXXXPPPP 929
KK PPPP + + + PPP KK + + PP P
Sbjct: 139 KKRKAPPPPSPPREEEAEDAVFQTTPPPSHKKVAERILNRRFFPPDP 185
>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
Length = 304
Score = 29.5 bits (63), Expect = 4.3
Identities = 18/46 (39%), Positives = 19/46 (41%)
Frame = +3
Query: 804 PPPPKKXTKXXSXFXFWGRXPPPXKKKXXXXLPXQXXXPPPPPXXK 941
PPPP + K PPP K K P Q PPPPP K
Sbjct: 58 PPPPPQPAK---------EPPPPTKPKHPK--PKQQQHPPPPPPQK 92
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 29.1 bits (62), Expect = 5.7
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 789 KKXAXPPPPKKXTKXXSXFXFWGRXPPPXKKKXXXXLPXQXXXPPPPP 932
K+ PPPPK+ K PP + P + PPPPP
Sbjct: 188 KEEPQPPPPKEEEKPEPPPAVIIVEPPAPAPEPEPEPPKKEPPPPPPP 235
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = +3
Query: 804 PPPPKKXTKXXSX-FXFWGRXPPPXKKKXXXXLPXQXXXPPPPP 932
PPPPK + PPP +P Q PPPPP
Sbjct: 234 PPPPKPANIAGAPGLPLPPPPPPPPGPPPREIVPGQTLLPPPPP 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,671,378
Number of Sequences: 37544
Number of extensions: 368089
Number of successful extensions: 1133
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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