Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B07
         (980 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    34   0.18 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   5.1  
Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
 Frame = +3

Query: 804 PPPPKKXTKXXSXFXF---WGRXPPPXKKKXXXXLPXQXXXPPPPP 932
           PPPP    +    F     W R PPP ++      P     PPPPP
Sbjct: 40  PPPPWHRNRGPPPFGPPPPWDRPPPPWRRPPWHRRPPWGLPPPPPP 85


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/57 (28%), Positives = 18/57 (31%)
 Frame = +3

Query: 804 PPPPKKXTKXXSXFXFWGRXPPPXKKKXXXXLPXQXXXPPPPPXXKXXXXXKXXXPP 974
           PPPP    +        G  PPP   +     P     PPPPP            PP
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGP--PGMGGMPPPPPPGMRYPGGMPPPPP 352


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/57 (28%), Positives = 18/57 (31%)
 Frame = +3

Query: 804 PPPPKKXTKXXSXFXFWGRXPPPXKKKXXXXLPXQXXXPPPPPXXKXXXXXKXXXPP 974
           PPPP    +        G  PPP   +     P     PPPPP            PP
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGP--PGMGGMPPPPPPGMRYPGGMPPPPP 362


>Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical
           protein ZC376.8 protein.
          Length = 278

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +3

Query: 870 PXKKKXXXXLPXQXXXPPPPPXXKXXXXXKXXXP 971
           P KKK     P     PPPPP  K     K   P
Sbjct: 37  PKKKKDVSGAPSAESPPPPPPAPKVPEPPKAPPP 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,976,238
Number of Sequences: 27780
Number of extensions: 202729
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)