Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_B06
(1031 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S80905-1|AAB50686.1| 382|Homo sapiens Con1 protein. 34 0.73
K03208-1|AAA60189.1| 251|Homo sapiens PRB2 protein. 32 3.9
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 31 9.0
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 31 9.0
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 31 9.0
>S80905-1|AAB50686.1| 382|Homo sapiens Con1 protein.
Length = 382
Score = 34.3 bits (75), Expect = 0.73
Identities = 30/108 (27%), Positives = 36/108 (33%), Gaps = 3/108 (2%)
Frame = +1
Query: 568 SPHGREXXLSPXTGGXPXGXTIXNQXPPNGQXPRKKGRLPLGGXXXKXSXPPGXXLXPXX 747
SP G+ P G P G PP G + +G P GG + PPG P
Sbjct: 203 SPPGKPQGPPPQGGNQPQGPP-----PPPG---KPQGPPPQGGNKSQGPPPPGKPQGPPP 254
Query: 748 XRPSKXKKGGQTPG---XXPLLXXTTPRXXLXXKXPPXGPHPXGXAXP 882
SK + PG P P+ P GP P G P
Sbjct: 255 QGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 302
Score = 33.5 bits (73), Expect = 1.3
Identities = 29/108 (26%), Positives = 36/108 (33%), Gaps = 3/108 (2%)
Frame = +1
Query: 568 SPHGREXXLSPXTGGXPXGXTIXNQXPPNGQXPRKKGRLPLGGXXXKXSXPPGXXLXPXX 747
SP G+ P G P G PP G + +G P GG + PPG P
Sbjct: 79 SPPGKPQGPPPQGGNQPQGPP-----PPPG---KPQGPPPQGGNKPQGPPPPGKPQGPPP 130
Query: 748 XRPSKXKKGGQTPG---XXPLLXXTTPRXXLXXKXPPXGPHPXGXAXP 882
+K + PG P P+ P GP P G P
Sbjct: 131 QGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 178
Score = 31.9 bits (69), Expect = 3.9
Identities = 28/104 (26%), Positives = 35/104 (33%), Gaps = 3/104 (2%)
Frame = +1
Query: 568 SPHGREXXLSPXTGGXPXGXTIXNQXPPNGQXPRKKGRLPLGGXXXKXSXPPGXXLXPXX 747
SP G+ P G P G PP G + +G P GG + PPG P
Sbjct: 141 SPPGKPQGPPPQGGNQPQGPP-----PPPG---KPQGPPPQGGNKPQGPPPPGKPQGPPP 192
Query: 748 XRPSKXKKGGQTPG---XXPLLXXTTPRXXLXXKXPPXGPHPXG 870
+K + PG P P+ P GP P G
Sbjct: 193 QGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 236
>K03208-1|AAA60189.1| 251|Homo sapiens PRB2 protein.
Length = 251
Score = 31.9 bits (69), Expect = 3.9
Identities = 28/104 (26%), Positives = 35/104 (33%), Gaps = 3/104 (2%)
Frame = +1
Query: 568 SPHGREXXLSPXTGGXPXGXTIXNQXPPNGQXPRKKGRLPLGGXXXKXSXPPGXXLXPXX 747
SP G+ P G P G PP G + +G P GG + PPG P
Sbjct: 10 SPPGKPQGPPPQGGNQPQGPP-----PPPG---KPQGPPPQGGNKPQGPPPPGKPQGPPP 61
Query: 748 XRPSKXKKGGQTPG---XXPLLXXTTPRXXLXXKXPPXGPHPXG 870
+K + PG P P+ P GP P G
Sbjct: 62 QGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 105
Score = 31.5 bits (68), Expect = 5.2
Identities = 29/108 (26%), Positives = 35/108 (32%), Gaps = 3/108 (2%)
Frame = +1
Query: 568 SPHGREXXLSPXTGGXPXGXTIXNQXPPNGQXPRKKGRLPLGGXXXKXSXPPGXXLXPXX 747
SP G+ P G P G PP G + +G P G + PPG P
Sbjct: 72 SPPGKPQGPPPQGGNQPQGPP-----PPPG---KPQGPPPQGDNKSQGPPPPGKPQGPPP 123
Query: 748 XRPSKXKKGGQTPG---XXPLLXXTTPRXXLXXKXPPXGPHPXGXAXP 882
SK + PG P P+ P GP P G P
Sbjct: 124 QGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 171
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 30.7 bits (66), Expect = 9.0
Identities = 25/80 (31%), Positives = 29/80 (36%)
Frame = +1
Query: 649 PNGQXPRKKGRLPLGGXXXKXSXPPGXXLXPXXXRPSKXKKGGQTPGXXPLLXXTTPRXX 828
P GQ P + P G PPG L P P +G + P P+L P
Sbjct: 231 PAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPN--RGDRPP--PPVLFPGQP--- 283
Query: 829 LXXKXPPXGPHPXGXAXPFP 888
PP GP P G P P
Sbjct: 284 --FGQPPLGPLPPGPPPPVP 301
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 30.7 bits (66), Expect = 9.0
Identities = 25/80 (31%), Positives = 29/80 (36%)
Frame = +1
Query: 649 PNGQXPRKKGRLPLGGXXXKXSXPPGXXLXPXXXRPSKXKKGGQTPGXXPLLXXTTPRXX 828
P GQ P + P G PPG L P P +G + P P+L P
Sbjct: 231 PAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPN--RGDRPP--PPVLFPGQP--- 283
Query: 829 LXXKXPPXGPHPXGXAXPFP 888
PP GP P G P P
Sbjct: 284 --FGQPPLGPLPPGPPPPVP 301
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 30.7 bits (66), Expect = 9.0
Identities = 25/80 (31%), Positives = 29/80 (36%)
Frame = +1
Query: 649 PNGQXPRKKGRLPLGGXXXKXSXPPGXXLXPXXXRPSKXKKGGQTPGXXPLLXXTTPRXX 828
P GQ P + P G PPG L P P +G + P P+L P
Sbjct: 231 PAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPN--RGDRPP--PPVLFPGQP--- 283
Query: 829 LXXKXPPXGPHPXGXAXPFP 888
PP GP P G P P
Sbjct: 284 --FGQPPLGPLPPGPPPPVP 301
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,169,101
Number of Sequences: 237096
Number of extensions: 1504484
Number of successful extensions: 2062
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2037
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 13931398152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -