Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_B06
(1031 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 34 0.14
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.8
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr... 29 7.1
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical... 29 7.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 9.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 9.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 9.4
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 34.3 bits (75), Expect = 0.14
Identities = 45/164 (27%), Positives = 53/164 (32%), Gaps = 7/164 (4%)
Frame = +1
Query: 418 GPRXRXGRXSPXXXXPPPXGXGG--WXXGRXFR-FPPHXR---XGLGRXVXXAEXXSPHG 579
GP G SP PPP GG G R PP R G GR +
Sbjct: 1467 GPPPPRGMNSPMRGMPPPMRGGGPPMRGGPPMRGGPPMFRGGPPGPGRGMPSPMMRGSSM 1526
Query: 580 REXXLSPXTGGXP-XGXTIXNQXPPNGQXPRKKGRLPLGGXXXKXSXPPGXXLXPXXXRP 756
R P GG P G + P + P P+GG PP + P
Sbjct: 1527 RGGF--PQRGGGPGMGPSQYYHDSPQNRGP------PMGGL-----PPPHGGMNGWRGGP 1573
Query: 757 SKXKKGGQTPGXXPLLXXTTPRXXLXXKXPPXGPHPXGXAXPFP 888
+ G G PL+ PR + PP GP P P P
Sbjct: 1574 PPPRGGSHCQGPPPLMGGPPPRLGM----PPPGPPPPNGGPPPP 1613
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.8
Identities = 27/102 (26%), Positives = 29/102 (28%), Gaps = 3/102 (2%)
Frame = +1
Query: 592 LSPXTGGXPXGXTIXNQXPPNGQXPRKK---GRLPLGGXXXKXSXPPGXXLXPXXXRPSK 762
L P TGG P P G P G P+ G PPG P P
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Query: 763 XKKGGQTPGXXPLLXXTTPRXXLXXKXPPXGPHPXGXAXPFP 888
KGG P P + P P G FP
Sbjct: 779 GFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVPKVDGPMRKFP 820
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.8
Identities = 27/102 (26%), Positives = 29/102 (28%), Gaps = 3/102 (2%)
Frame = +1
Query: 592 LSPXTGGXPXGXTIXNQXPPNGQXPRKK---GRLPLGGXXXKXSXPPGXXLXPXXXRPSK 762
L P TGG P P G P G P+ G PPG P P
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Query: 763 XKKGGQTPGXXPLLXXTTPRXXLXXKXPPXGPHPXGXAXPFP 888
KGG P P + P P G FP
Sbjct: 779 GFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVPKVDGPMRKFP 820
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.8
Identities = 27/102 (26%), Positives = 29/102 (28%), Gaps = 3/102 (2%)
Frame = +1
Query: 592 LSPXTGGXPXGXTIXNQXPPNGQXPRKK---GRLPLGGXXXKXSXPPGXXLXPXXXRPSK 762
L P TGG P P G P G P+ G PPG P P
Sbjct: 302 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 361
Query: 763 XKKGGQTPGXXPLLXXTTPRXXLXXKXPPXGPHPXGXAXPFP 888
KGG P P + P P G FP
Sbjct: 362 GFKGGPPPPPPPGMFAPMAPVIPDYLPPKKVPKVDGPMRKFP 403
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 29.1 bits (62), Expect = 5.4
Identities = 22/79 (27%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Frame = +1
Query: 571 PHGREXXLSPXTGGXPXGXTIXNQXPPNGQXPRKKGRLPLG------GXXXKXSXPPGXX 732
P + P TGG P G PP Q P G P G G + PPG
Sbjct: 218 PQAPNSFIPPGTGGFPPGQPTAGSFPPGPQVP---GSYPSGPADIPQGPGMPRAFPPGAS 274
Query: 733 LXPXXXRPSKXKKGGQTPG 789
P G PG
Sbjct: 275 APVAPGMPGAFPPGQGGPG 293
>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
Y6B3B.1 protein.
Length = 1829
Score = 28.7 bits (61), Expect = 7.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 580 REXXLSPXTGGXPXGXTIXNQXPPNGQXPRKKGRLPLGGXXXKXSXPP 723
R+ LSP G P G + + Q R++G+ PL G + S P
Sbjct: 1502 RQEPLSPQDSGDPVGPPAIKKGKLSRQPGRREGQKPLLGPFQRRSADP 1549
>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 28.7 bits (61), Expect = 7.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 580 REXXLSPXTGGXPXGXTIXNQXPPNGQXPRKKGRLPLGGXXXKXSXPP 723
R+ LSP G P G + + Q R++G+ PL G + S P
Sbjct: 1502 RQEPLSPQDSGDPVGPPAIKKGKLSRQPGRREGQKPLLGPFQRRSADP 1549
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 9.4
Identities = 25/92 (27%), Positives = 28/92 (30%), Gaps = 1/92 (1%)
Frame = +1
Query: 598 PXTGGXPXGXTIXNQXPP-NGQXPRKKGRLPLGGXXXKXSXPPGXXLXPXXXRPSKXKKG 774
P TG P T PP G P + P + S P G L P S G
Sbjct: 267 PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGS-LPPPQAGGSPPPAG 325
Query: 775 GQTPGXXPLLXXTTPRXXLXXKXPPXGPHPXG 870
+P P P PP G P G
Sbjct: 326 TGSPPPPPRQKRQAPERSPPTGSPPTGSPPTG 357
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 9.4
Identities = 25/92 (27%), Positives = 28/92 (30%), Gaps = 1/92 (1%)
Frame = +1
Query: 598 PXTGGXPXGXTIXNQXPP-NGQXPRKKGRLPLGGXXXKXSXPPGXXLXPXXXRPSKXKKG 774
P TG P T PP G P + P + S P G L P S G
Sbjct: 288 PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGS-LPPPQAGGSPPPAG 346
Query: 775 GQTPGXXPLLXXTTPRXXLXXKXPPXGPHPXG 870
+P P P PP G P G
Sbjct: 347 TGSPPPPPRQKRQAPERSPPTGSPPTGSPPTG 378
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 9.4
Identities = 25/92 (27%), Positives = 28/92 (30%), Gaps = 1/92 (1%)
Frame = +1
Query: 598 PXTGGXPXGXTIXNQXPP-NGQXPRKKGRLPLGGXXXKXSXPPGXXLXPXXXRPSKXKKG 774
P TG P T PP G P + P + S P G L P S G
Sbjct: 273 PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGS-LPPPQAGGSPPPAG 331
Query: 775 GQTPGXXPLLXXTTPRXXLXXKXPPXGPHPXG 870
+P P P PP G P G
Sbjct: 332 TGSPPPPPRQKRQAPERSPPTGSPPTGSPPTG 363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,003,603
Number of Sequences: 27780
Number of extensions: 178236
Number of successful extensions: 227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2730644118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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