Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B05
         (884 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   1.0  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   4.2  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   5.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   7.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 371 AFLFRVVHVSYLVHLSWFSIPLF 303
           AF+   VH+ +L+ + +F +PLF
Sbjct: 119 AFIIFTVHLLFLLCIYYFVVPLF 141


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 423 LEINRDPVS-IETIMKNWEEYVAQNVSLACYTEVDGEPDELVGFNIVLVKSIDDIDEDLD 599
           +++N   +S +ET   N  E   QN+SL   +E   EP+       +   ++D+I +  D
Sbjct: 493 IDLNSGDLSMLET--NNLSETFTQNLSLMDESEGRQEPNMTDSLTRLANSALDNICQASD 550

Query: 600 TVKG 611
             KG
Sbjct: 551 MYKG 554


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 83  VLNSRKIGFPMINKYNRNVNINKIYSKIY 169
           V  SRKI    I +YN  +   KI S  Y
Sbjct: 221 VAESRKIFIECIEQYNVILRYTKIVSDTY 249


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 829 VVXVKTVAVASMPRAFPRGSLAAKSLAPM 743
           +V   +V+ AS+P   P G    K L P+
Sbjct: 190 LVNAPSVSPASLPSISPSGGFLPKWLPPL 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,376
Number of Sequences: 336
Number of extensions: 3898
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)