Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B05
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    27   3.6  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        27   4.7  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   8.2  

>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -2

Query: 403 SLKKVLFINSKH--FSFASSMSLIWYI 329
           S+KK+LFI++ H   +  +S + IWYI
Sbjct: 189 SMKKLLFISNSHSIVALVASSASIWYI 215


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -2

Query: 397 KKVLFINSKHFSFASSMSLIWYILA 323
           +K+L+  +  F FAS+ S +W++++
Sbjct: 316 RKLLWARNGFFIFASAFSFVWFVIS 340


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 876 VPLTSXSHTSLPRPGTW 826
           +P+TS S T+ P+P  W
Sbjct: 611 IPVTSGSQTTAPKPSPW 627


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,856
Number of Sequences: 5004
Number of extensions: 62849
Number of successful extensions: 208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)