Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_B05
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1065 + 9427870-9427974,9428069-9428121,9428994-9429173,942... 34 0.13
07_03_0103 - 13425411-13425713,13425874-13425974,13426410-134264... 31 1.6
12_01_0396 - 3128047-3128273,3128350-3128632,3128717-3128874,312... 29 5.0
08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,305... 29 6.6
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694... 29 6.6
03_02_0812 - 11439258-11439409,11439537-11439612,11439860-114400... 29 6.6
10_08_0898 + 21424379-21424792,21424974-21425723 28 8.7
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 28 8.7
03_02_0644 + 10118790-10119559,10120252-10120432,10120526-101207... 28 8.7
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 28 8.7
>07_01_1065 +
9427870-9427974,9428069-9428121,9428994-9429173,
9429252-9429492
Length = 192
Score = 34.3 bits (75), Expect = 0.13
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 651 ENLCNVFK-YYGVDKYLTSSGLTVLPEHRGQNIGARLFAAREPL 779
+N ++ K GVD+YL SG+ VLP R + +G L A E L
Sbjct: 85 QNEADILKNLQGVDEYLYVSGIAVLPSFRRRKVGTALLKACEAL 128
>07_03_0103 -
13425411-13425713,13425874-13425974,13426410-13426471,
13426951-13427123
Length = 212
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 722 ARAPRSEHRSQTLRGQRAPGKRSWHRGDCYRLHGHHVPG 838
AR PR+ QTL G A + + G CYR G H G
Sbjct: 7 ARLPRATPHLQTLGGGAARRQSAAGAGPCYRAEGGHCHG 45
>12_01_0396 -
3128047-3128273,3128350-3128632,3128717-3128874,
3129097-3129314,3129682-3129912,3130630-3130691
Length = 392
Score = 29.1 bits (62), Expect = 5.0
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Frame = +3
Query: 294 FKGKERDGKPAKMYQIRDMDDAK--EKCL----------ELMKSTFLRDEPLCDV----- 422
FK + KPA Y+I+D + E CL EL+KS+FL+D+ L V
Sbjct: 218 FKKIDEGKKPAAFYKIKDAEVRSFIENCLAPVENRMSATELLKSSFLQDDDLISVSLVKN 277
Query: 423 -LEINRDPVSIETIMKNWEEYVAQNVSLACYTEV 521
E + PVS +++ E + NV +A + ++
Sbjct: 278 MSEDGQQPVS--CMLRKGEFLLTGNVDVASHVDL 309
>08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,
3057104-3057232,3057313-3057572,3057688-3058001,
3058268-3058491,3058862-3059214,3059489-3059916,
3060031-3061514
Length = 1242
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 815 DGSSRLYAKSVSQGLSGREESGSDVLTSVLGQHREPARGQVLVHAV-VFEYVAQILR 648
DG S L G +G + S+L + +P RGQVLV V EY + LR
Sbjct: 1008 DGFSLAIEPGQRVALVGPSGAGKSTIVSLLLRFYDPCRGQVLVDGKDVREYNLRFLR 1064
>04_04_0348 + 24568834-24568904,24569019-24569148,24569310-24569459,
24569546-24569650,24569808-24570029,24570162-24570274,
24570371-24570470,24571125-24571325,24571401-24571549,
24571624-24571765,24571851-24571991,24572098-24572286,
24572622-24572835,24573198-24573291,24573671-24573905,
24574242-24574433,24574919-24575017,24575443-24575532,
24575709-24575912,24575994-24576269,24576974-24577096,
24577453-24577608,24577686-24577802,24577878-24577957,
24578173-24578377,24578485-24578687,24578882-24578933
Length = 1350
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 558 VLVKSIDDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYGVDKYLTSS 707
V+VK I ++ + + GE K + L+E NL V GVD T S
Sbjct: 1168 VIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGVDAMKTKS 1217
>03_02_0812 -
11439258-11439409,11439537-11439612,11439860-11440076,
11440150-11440350,11440673-11440872,11440955-11441075,
11441596-11441636,11441714-11441822,11442037-11442281,
11442382-11442496,11442970-11443064,11444279-11444535,
11444780-11444999,11445473-11445556
Length = 710
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 457 VSIETGSLLISNTSQSGSSLKKVLFINSKH--FSFASSMSLIW 335
V + T ++++ + S SS+ K+LF+N H F+ A IW
Sbjct: 660 VHLVTTTVVLESLPLSNSSVGKILFVNKSHGLFAIAGGQVGIW 702
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 610 ANPGRSCLGH**KRRICATYSNTTAWTST*PRAGSRCCPSTEVRTSE-PDSSRP 768
A PGR +R AT + AW S PR S+ PS+ +S+ P S++P
Sbjct: 194 AAPGRGARS----KRSRATAAAAAAWHSLVPRPPSQSSPSSSCSSSDFPSSNKP 243
>04_04_1228 +
31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 516 EVDGEPDELVGFNIVLVKSIDDIDEDLDTVKGESWKKLLRTLIEAENLCNV 668
E DG P+EL+ + + + +D D+ + + WKKLL L + + N+
Sbjct: 382 EKDGRPEELIEQRLKSKRFLLILD-DIWKCQSDDWKKLLLPLTKGQTKGNI 431
>03_02_0644 +
10118790-10119559,10120252-10120432,10120526-10120725,
10120834-10120992,10122375-10122741
Length = 558
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/42 (26%), Positives = 29/42 (69%)
Frame = +3
Query: 372 LELMKSTFLRDEPLCDVLEINRDPVSIETIMKNWEEYVAQNV 497
++++K +F D+ + +E++R PV+ + ++K W ++V +N+
Sbjct: 381 MKVLKGSF--DQGATEYVEVDR-PVAYKEVLKTWAKWVDRNI 419
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = -1
Query: 860 VATLRCQDLGRGXREDGSSRLYAKSVSQGLSGREESGSDVLTSVLGQHREPARGQV 693
+A R + LGR R D + + S+ G GR+ G ++ SVL + R RG+V
Sbjct: 17 LAFFRLRPLGRAVRPDSARAGWHFSLYGGCRGRQVHG--LVDSVLEELRSQRRGRV 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,725,164
Number of Sequences: 37544
Number of extensions: 415920
Number of successful extensions: 1283
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -